View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5417_low_14 (Length: 280)
Name: NF5417_low_14
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5417_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 19247351 - 19247601
Alignment:
| Q |
21 |
tttgaaaaacatactgacaacaatcaatatagtttgggctgttctgctaatgtttaataagtttcaagagatatgtcatactttgctctaacaatgtaat |
120 |
Q |
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| T |
19247351 |
tttgaaaaacatattgacaacaatcaatatagtttgggttgttctgctaatgtttaataagtttcaagagatatgtcatattttgctctaacaatgtaat |
19247450 |
T |
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| Q |
121 |
catataaatatattttaatggattttacatattgttgtatattttcaaatttctttaggtgagttgatatattagttataaataacaagttagggtaaac |
220 |
Q |
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| T |
19247451 |
catataaatatattttaatggattttacatattgttgtatattttcaaatttctttaggtgagttgatatattagttataagtaggaagttagggcaaac |
19247550 |
T |
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| Q |
221 |
atgatcgtctcaaatctcaatgacagtaatcaatttaaaaggaagtataat |
271 |
Q |
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| T |
19247551 |
atgatcgtctcaaatctcaatgacagtaatcaatttaaaaggaagtataat |
19247601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 17665025 - 17665113
Alignment:
| Q |
80 |
agtttcaagagatatgtcatactttgctctaacaatgtaatcatataaatatattttaatggattttacatattgttgtatattttcaaa |
169 |
Q |
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| T |
17665025 |
agtttcaagagatatgtcatattttgctctaacaatgtaatcatat-aatatattttaatggattttacatattgttgtatattttcaaa |
17665113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 17664995 - 17665029
Alignment:
| Q |
21 |
tttgaaaaacatactgacaacaatcaatatagttt |
55 |
Q |
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| T |
17664995 |
tttgaaaaacatattgacaacaatcaatatagttt |
17665029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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