View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5417_low_16 (Length: 271)
Name: NF5417_low_16
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5417_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 32345878 - 32346131
Alignment:
| Q |
1 |
agcacatttcaggggttgaagaaggtatggaacgacttgtgggattcctaaaagaccaagggtaattgaaggcaagaagatcttcaagaggacataaatt |
100 |
Q |
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| T |
32345878 |
agcacatttcaggagttgaagaaggtatgaaacgacttgtgggattcctaaaagaccaagggtaattgaagacaagaagatcttcaagaggacataaatt |
32345977 |
T |
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| Q |
101 |
aatcaatccagaggttgaagaggtaatggtgataagttatggagctacttaaaaggctcagtgtagttggaggcaagtattcaagaaggcaaaagatgtt |
200 |
Q |
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| T |
32345978 |
aatcaatccagaggttgaagaggttatggtgataagttatggagctacttaaaaggctcagtgtagttggaggcaagtattcaagaaggcaaaagatgtt |
32346077 |
T |
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| Q |
201 |
tcgaggttcaatgaggtaaaggtggaacaacaaggctgacgtagacatcctaaa |
254 |
Q |
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| T |
32346078 |
tcgaggttcaatgaggtaaaggtggaacaacaaggctgacgtaaacatcctaaa |
32346131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 10456234 - 10456153
Alignment:
| Q |
15 |
gttgaagaaggtatggaacgacttgtgggatt-cctaaaagaccaagggtaattgaaggcaagaagatcttcaagaggacat |
95 |
Q |
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| T |
10456234 |
gttgaagaatgtatggcacaacttgtgggattacctaaaagaccaagggtgattggatgtaaggagatattcaagaagacat |
10456153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 37048344 - 37048262
Alignment:
| Q |
12 |
ggggttgaagaaggtatggaacgacttgtgggatt-cctaaaagaccaagggtaattgaaggcaagaagatcttcaagaggac |
93 |
Q |
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| T |
37048344 |
ggggttgaagaaggtatggaatggcttatgggattacctaaaagaccaagggtaattggaggcaagagaatcttcaagaggac |
37048262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 29797170 - 29797096
Alignment:
| Q |
16 |
ttgaagaaggtatggaacgacttgtgggatt-cctaaaagaccaagggtaattgaaggcaagaagatcttcaaga |
89 |
Q |
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|||| ||| |||||||| ||||||||||||| ||||||||||||| |||||||| | ||||| | |||||||||| |
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| T |
29797170 |
ttgaggaatgtatggaatgacttgtgggattacctaaaagaccaatggtaattgcatgcaaggaaatcttcaaga |
29797096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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