View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5417_low_18 (Length: 250)
Name: NF5417_low_18
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5417_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 9641245 - 9641476
Alignment:
| Q |
1 |
tattatgtattaacaatagcaaattataaattggggatgtgtacatggatccacttatacatcttttagttggatgctctaactctaaggttataaacat |
100 |
Q |
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| T |
9641245 |
tattatgtattaacaataacaaattataaattggggatgtgtacatggatccacttatacatcttttagttggatgctctaactctaaggttataaacat |
9641344 |
T |
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| Q |
101 |
ttctttaaaaaatcattaagtctactagattctatcctaaaatgaattccatttattgaggtatcattgttaatagtagttagtggaatcaatatgtgaa |
200 |
Q |
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| T |
9641345 |
ttctttaaaaaatcattaagtctactggattctatcctaaaatgagttccatttattgaggtatcattgttaatagtagttagtggaatcaatatgtgaa |
9641444 |
T |
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| Q |
201 |
ttgacatacaattaaaattggtatattagtga |
232 |
Q |
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| T |
9641445 |
ttgacatacaattaaaattggtatattagtga |
9641476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 9641877 - 9641845
Alignment:
| Q |
109 |
aaaatcattaagtctactagattctatcctaaa |
141 |
Q |
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| T |
9641877 |
aaaatcattaagtctactagattctatcataaa |
9641845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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