View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5417_low_2 (Length: 533)
Name: NF5417_low_2
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5417_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 525
Target Start/End: Original strand, 48658785 - 48659292
Alignment:
| Q |
17 |
acaatctttcacacgtactcagctaaagtaataaaactaccaattgtactccttcaattttacaattgttatcagtttaatnnnnnnnnttgttttataa |
116 |
Q |
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| T |
48658785 |
acaatctttcacacgtactcagctaaagtaataaaactaccaattgtactccttcaatttcacaattgttatcagtttaataaaaaaaattgttttataa |
48658884 |
T |
|
| Q |
117 |
tgaattgacatttttaatataaacaannnnnnnnncaatttttcactctaattaatatcatgggctctccccaatcttatttataaacctaaaatgaatt |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48658885 |
tgaattgacatttttaatataaacaatttttttttcaatttttcactctaattaatatcatgggctctccccaatcttatttataaacataaaatgaatt |
48658984 |
T |
|
| Q |
217 |
aaatttggtggcatgcaatataagcaaaagtcatcaaattcaactctatcattattgattctaaatactcattcatttctcaa-nnnnnnnnaatatgag |
315 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
48658985 |
aaatttggtggcatggaatataagcaaaagtcatcaaattcaactctatcattattaattctaaatactcattcatttctcaatttttttttaatatgag |
48659084 |
T |
|
| Q |
316 |
tgcatattccaatgcaaagtaagatgattattgtagtagagaatattttagtgattactacatccgttcctaaatacaagacgnnnnnnnnngttgctaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |
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| T |
48659085 |
tgcatattccaatgcaaagtaagatgattattgtagtagagaatattttagtgattactacatccgttcttaaatacaagac--ttttttttttcgctaa |
48659182 |
T |
|
| Q |
416 |
attatgagaaccgtcctaagcttttcattctagaactctccgtcttggctcgctttcacattgctcaactcgtctagcgaatattgcttttcattggttg |
515 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |
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| T |
48659183 |
attatgagaaccgtcctaagctttgcattctagaactctccgtcttggctcgctttcacattgctcaactcgtctagcaaatagtgcttttcattggatg |
48659282 |
T |
|
| Q |
516 |
tctctctgct |
525 |
Q |
| |
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||| |||||| |
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| T |
48659283 |
tctttctgct |
48659292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 36345030 - 36345062
Alignment:
| Q |
233 |
aatataagcaaaagtcatcaaattcaactctat |
265 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
36345030 |
aatacaagcaaaagtcatcaaattcaactctat |
36345062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 20618495 - 20618544
Alignment:
| Q |
444 |
tctagaactctccgtcttggctcgctttcacattgctcaactcgtctagc |
493 |
Q |
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|||||||||||| || |||||| |||||||| ||||||| |||||||||| |
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| T |
20618495 |
tctagaactctcagtattggcttgctttcaccttgctcagctcgtctagc |
20618544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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