View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5417_low_5 (Length: 469)
Name: NF5417_low_5
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5417_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 15406792 - 15407242
Alignment:
| Q |
18 |
caagtaaatctttgagttttgctcaaagaccaggttatggacaagctggtacaaaatgcattgttaaagccaaccacttctttgcagaattaccagacaa |
117 |
Q |
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| T |
15406792 |
caagtaaatctttgagttttgctcaaagaccaggttatggacaagctggtacaaaatgcattgttaaagccaaccacttctttgcagaattaccagacaa |
15406891 |
T |
|
| Q |
118 |
ggacttgaaccaatatgatgtaaggttctttgtttagtctttattactctagttctagctttctgcaaaaacaatatagtttggttttcttagtgactca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15406892 |
ggacttgaaccaatatgatgtaaggttctttgtttagtctttattactctagttctagctttctgcaaaaacaatatagtttggttttcttagtgactca |
15406991 |
T |
|
| Q |
218 |
cacaacacaccttttatggaagtatttaagttttaccccttaatttcctcttatatgtgctgttgaatttcataatgaattaaatgatgttctgtttttg |
317 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |
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| T |
15406992 |
cacaacacaccttttatggaagtatttaagttttatcccttaatttcctcttatatgtgctgttgaattgcagaatgaattaaatgaggttctgtttttg |
15407091 |
T |
|
| Q |
318 |
cagtcatttttcttagtaacatttatgagtccttattttgcctctaggctttagttgtgttatttaacnnnnnnntttagacaactttttacgacaactt |
417 |
Q |
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| T |
15407092 |
cagtcatttttcttagtaacatttatgagtccttattttgcctctaggctttagttgtgttatttaacaaaaaaatttagacaactttttaggacaactt |
15407191 |
T |
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| Q |
418 |
ttgaagttgttaacacaattcaaataggtggttaattgtgtctggtagatg |
468 |
Q |
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| T |
15407192 |
ttgaagttgttaacacaattcaaataggtggttaattgtgtccggtagatg |
15407242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 46372668 - 46372754
Alignment:
| Q |
55 |
tggacaagctggtacaaaatgcattgttaaagccaaccacttctttgcagaattaccagacaaggacttgaaccaatatgatgtaag |
141 |
Q |
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| T |
46372668 |
tggacaagttgggacaaaatgtattgtgaaggctaaccacttctttgcagagttaccagacaaggacttaaaccaatatgatgtaag |
46372754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 452
Target Start/End: Original strand, 4504449 - 4504506
Alignment:
| Q |
394 |
ttagacaactttttacgacaacttttgaagttgttaacacaattcaaataggtggttaa |
452 |
Q |
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| T |
4504449 |
ttagacaactttt-acgacaacaatcgaagtgattaacacaattcaaataggtggttaa |
4504506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 30526229 - 30526185
Alignment:
| Q |
411 |
acaacttttgaagttgttaacacaattcaaataggtggttaattg |
455 |
Q |
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||||||||| |||| ||||||||| |||||||| ||||||||||| |
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| T |
30526229 |
acaactttttaagtggttaacacacttcaaataagtggttaattg |
30526185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 30566569 - 30566525
Alignment:
| Q |
411 |
acaacttttgaagttgttaacacaattcaaataggtggttaattg |
455 |
Q |
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||||||||| |||| ||||||||| |||||||| ||||||||||| |
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| T |
30566569 |
acaactttttaagtggttaacacacttcaaataagtggttaattg |
30566525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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