View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5417_low_9 (Length: 383)
Name: NF5417_low_9
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5417_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 48170733 - 48170378
Alignment:
| Q |
17 |
agttatgatagattatatcggtttattttatccaatatgataagtttgtttagcagcatcactataaagaaggctaatgcaagatcattggctcaagtaa |
116 |
Q |
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| T |
48170733 |
agttatgatagattatatcggtttattttatccaatatgataagtttgtttagcagcatcactataaagaaggctaatgcaagatcattggctcaagtaa |
48170634 |
T |
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| Q |
117 |
ttttctcatgttcacttctctaacttgctggaaagatatgaagaaataagtagcatgagacgtgtatcttaaggattatttcactgtggaggtaatttta |
216 |
Q |
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| T |
48170633 |
ttttctcatgttcacttctctaacttgctggaaagatatgaagaaataagtagcatgagacgtgtatcttaaggattatttcactgtggaggtaatttta |
48170534 |
T |
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| Q |
217 |
atgatgtgaatatccatctggactcttctgcaatgagctccagttaannnnnnnngttaactcgttgctgtttcttcttcatttatgaggctaatttcac |
316 |
Q |
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| T |
48170533 |
atgatgtgaatatccatctggactcttctgcaatgagctccagttaattttttttgttaactcattgctgtttcttcttcatttatgaggctaatttcac |
48170434 |
T |
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| Q |
317 |
gaatcataaatataattatgggcttgatcttcgttttttggtagatgttgttctgt |
372 |
Q |
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| T |
48170433 |
gaatcataaatataattatgggcttgatcttcgttttttggtagatgttgttctgt |
48170378 |
T |
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