View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418-Insertion-1 (Length: 1110)

Name: NF5418-Insertion-1
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418-Insertion-1
NF5418-Insertion-1
[»] chr8 (2 HSPs)
chr8 (7-1019)||(44248984-44249999)
chr8 (165-948)||(44252749-44253524)
[»] chr7 (26 HSPs)
chr7 (615-897)||(11821330-11821611)
chr7 (216-393)||(11813805-11813982)
chr7 (221-384)||(11808266-11808429)
chr7 (9-132)||(11807904-11808027)
chr7 (217-384)||(11816388-11816555)
chr7 (216-409)||(11819923-11820116)
chr7 (217-393)||(11814926-11815102)
chr7 (219-343)||(11820904-11821028)
chr7 (219-388)||(11811278-11811451)
chr7 (221-396)||(11808678-11808855)
chr7 (216-382)||(11810331-11810497)
chr7 (515-581)||(11819554-11819620)
chr7 (216-384)||(11811986-11812154)
chr7 (250-388)||(11815905-11816044)
chr7 (448-534)||(11816589-11816676)
chr7 (427-532)||(11815154-11815259)
chr7 (434-534)||(11812221-11812322)
chr7 (255-382)||(11809659-11809786)
chr7 (427-516)||(11814034-11814122)
chr7 (219-339)||(11812870-11812990)
chr7 (482-560)||(11821190-11821268)
chr7 (520-600)||(11809980-11810060)
chr7 (434-533)||(11810566-11810666)
chr7 (148-195)||(11809564-11809611)
chr7 (427-533)||(11820151-11820257)
chr7 (457-534)||(11808930-11809008)
[»] chr5 (3 HSPs)
chr5 (625-898)||(15273545-15273821)
chr5 (515-576)||(15273820-15273881)
chr5 (9-82)||(15274306-15274379)
[»] chr3 (1 HSPs)
chr3 (692-741)||(51381553-51381602)


Alignment Details
Target: chr8 (Bit Score: 863; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 863; E-Value: 0
Query Start/End: Original strand, 7 - 1019
Target Start/End: Original strand, 44248984 - 44249999
Alignment:
Q  7 agctctcttgtcatgaacccaattgccattgaaatagtcacattgtttctcttgaggtttttccttttctgccaaaaatgaaaagaataattaggtcaag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44248984 agctctcttgtcatgaacccaattgccattgaaatagtcacattgtttctcttgaggtttttccttttctgccaaaaatgaaaagaataattaggtcaag 44249083  T
Q  107 tgaattgtcgaatataaacaagatttnnnnnnnttgtgtagccataacatagccgcaattgatttgatgttgcatcccctaatgtttacccgtgacaaca 206  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44249084 tgaattgtcgaatataaacaagatttaaaaaaattgtgtagccataacatagccgcaattgatttgatgttgcatcccctaatgtttactcgtgacaaca 44249183  T
Q  207 annnnnnnngaaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttc 306  Q
    |        |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44249184 attttttt-gaaatatgtgtcaccataatgtgattgaaattagtttgataagataagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttc 44249282  T
Q  307 catcgaaggaggtgtgatgcccatctccaccatccaaatcttttttcgtacttgaaactgcatgtggtacaaaaaagacaattgtttagaatacgcagta 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  44249283 catcgaaggaggtgtgatgcccatctccaccatccaaatctttttttgtacttgaaactgcatgtagtacaaaaaagacaatagtttagattacgcagta 44249382  T
Q  407 gaaatcttttactggagaagactcccaaaattttcttcttctaaaatatctataaattaagtgacacacacaaacaaaaaagaactttgagttataaata 506  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44249383 gaaatcttttactggagaagactcccaaatttttcttcttctaaaatatctataaattaagtgacacgcacaaacaaaaaagaactttgagttataaata 44249482  T
Q  507 gaagaggtccc-tcaaaaatatcgatcaaattctaaccctaacaatttttataattctctataatttcaaacatcacaattaatctacaatttaattaaa 605  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44249483 gaagaggtcccctcaaaaatatcgatcaaattctaaccctaacaatttttataattctctataatttcaaagatcacaattaatctacaatttaattaaa 44249582  T
Q  606 atctatgatataaacatagaagatggatttcactagacactagcaaaggtacattgctagtgagtttaccttttctcaaaggaggggaagcaaaaagtga 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44249583 atctatgatataaacatagaagatggatttcactagacactagcaaaggtacattgctagtgagtttaccttttctcaaaggaggggaagcaaaaagtga 44249682  T
Q  706 agattggtgagtgatggaagtgaaaattggagcaaataagtggaagtaaaagtatagacaaattagagctaaaggtagtagtgaatagaaaattgagggc 805  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44249683 agattggtgagtgatggaagtgaaaattggagcaaatgagtggaagtaaaagtatagacaaattagagcgaaaggtagtagtgaatagaaaattgagggc 44249782  T
Q  806 acaaatgttttggtgaatttttctttgaatggttttgtagttgtggtcatctttattcaaagcgttttcttattctcgtttttggctttgttcctcacta 905  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44249783 acaaatgttttggtgaatttttctttgaatggttttgtagttgtggtcatcttttttcaaagcgttttcttattctcgtttttggctttgttcctcacta 44249882  T
Q  906 gtttaaatggtgatcattctaatattggtttctcccttggtttaacagcaagtgttgacattaattatctactaagtattttttagac-aaacgtctt-a 1003  Q
    |||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||||||||||| | ||||||||| |    
T  44249883 gtttaaatggtgatcattctaagattggtttctcccttgttttaatagcaaatgttgacattaattatctaataagtattttttaggcaaaacgtcttaa 44249982  T
Q  1004 ttg-aaagcttcttttt 1019  Q
    ||| |||||||||||||    
T  44249983 ttgaaaagcttcttttt 44249999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 165 - 948
Target Start/End: Original strand, 44252749 - 44253524
Alignment:
Q  165 ttgatttgatgttgcatcccctaatgtttacccgtgacaacaannnnnnnn-gaaatatgtgtcaccataatgtgattgaaa-ttagtttgataagagaa 262  Q
    ||||||||||||||| ||||||||||||||  ||||| |||||         ||||| ||||| |||||||||||||||||| ||| |||||||||||||    
T  44252749 ttgatttgatgttgcgtcccctaatgtttattcgtgaaaacaatttttttttgaaatttgtgttaccataatgtgattgaaaattaatttgataagagaa 44252848  T
Q  263 gaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggaggtgtgatgcccatctccaccatccaaatcttttttcgtacttgaa 362  Q
    |||||||||||||||| |||||   | |||||||||||||||||||| | ||||||| |||| | |||||||||||| ||| |  |||||| || || ||    
T  44252849 gaaagtgttgtaacacttacttgtatcctcttccgtgaagtttccattggaggaggtatgattctcatctccaccattcaatttatttttcataattaaa 44252948  T
Q  363 actgcatgtggtacaa-aaaagacaattgtttagaatacgcagtagaaatcttttactggagaagactcccaaaattttcttcttctaaaatatctataa 461  Q
    |||||| ||||||||| |||||| ||  | ||||| ||| | ||| |||||||| || ||| |||||||||||||||||||||||||||| |||||||||    
T  44252949 actgcacgtggtacaagaaaagaaaacaggttagattacacggtacaaatctttgaccggaaaagactcccaaaattttcttcttctaaagtatctataa 44253048  T
Q  462 attaagtgacacacacaaacaaaaaagaactttgagttataaatagaagaggtccctcaaaaatatcgatcaaattctaaccctaacaatttttataatt 561  Q
    ||||||||||| | | ||| |||||| |||||| | ||||| |||||||| |||||  |||| ||||||| |||||||||||||||||||||||||||||    
T  44253049 attaagtgacataaaaaaaaaaaaaaaaactttaaattatacatagaagaagtcccctaaaagtatcgataaaattctaaccctaacaatttttataatt 44253148  T
Q  562 ctctataatttcaaacatcacaattaatctacaatttaattaaaatctatgatataaacatagaagatggatttcactagacactagcaaaggtacattg 661  Q
    ||||||||||| ||| ||||| || ||||| |||||||||||||| |||||||||||||||||| |||| | |||||| |||||||||||||| |||||     
T  44253149 ctctataattttaaagatcacgataaatctgcaatttaattaaaacctatgatataaacatagatgatgaaattcactggacactagcaaaggcacatta 44253248  T
Q  662 ctagtgagtttaccttttctcaaaggaggggaagcaaaaagtgaagattggtgagtgatggaagtgaaaattggagcaaataagtggaagtaaaagtata 761  Q
    ||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||    
T  44253249 ctaatgaatttaccttttctcaaaggaggggaagcagaaagtgaagattggtgagtgatgggagtgaaaaatggagcaaatgagtggaagtaaaagtata 44253348  T
Q  762 gacaaattagagctaaaggtagtagtgaatagaaaattgagggcacaaatgttttggtgaatttttctttgaatggttttgtagttgtggtcatctttat 861  Q
    ||||||||||||||| |||||| ||||||||||| |||||| ||| |||||||||||||| ||||||||||||            |||| |||||||| |    
T  44253349 gacaaattagagctataggtagcagtgaatagaagattgagtgcaaaaatgttttggtgagtttttctttgaa------------tgtgatcatcttttt 44253436  T
Q  862 tcaaagcgttttcttattctcgtttttggctttgttcctcactagtttaaatggtgatcattctaatattggttt-ctcccttggttt 948  Q
    ||||||||||||||||||||||||||||||||||||| ||||| | | ||  |||||||||||||| ||||||||  |||||||||||    
T  44253437 tcaaagcgttttcttattctcgtttttggctttgttcttcacttggtcaaggggtgatcattctaagattggtttattcccttggttt 44253524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 9e-70; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 9e-70
Query Start/End: Original strand, 615 - 897
Target Start/End: Original strand, 11821330 - 11821611
Alignment:
Q  615 ataaacatagaagatggatttcactagacactagcaaaggtacattgctagtgagtttaccttttctcaaaggaggggaagcaaaaagtgaagattggtg 714  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||||||||| | |||||||||| | ||| ||||||||  | ||||||||| ||||||    
T  11821330 ataaacatagaagatggaattcactatacactagcaaagttacattgctagttaatttaccttttgttaaatgaggggaaatagaaagtgaaggttggtg 11821429  T
Q  715 agtgatggaagtgaaaattggagcaaataagtggaagtaaaagtatagacaaattagagctaaaggtagtagtgaatagaaaattgagggcacaaatgtt 814  Q
    |||||||| |||| ||| |||||||||| ||  ||||||||||||||| |||| ||||||||||||||| |  ||||||||||| |||||||||||||||    
T  11821430 agtgatgggagtgtaaaatggagcaaatgaggagaagtaaaagtataggcaaactagagctaaaggtagcaaagaatagaaaatggagggcacaaatgtt 11821529  T
Q  815 ttggtgaatttttctttgaatggttttgtagttgtggtcatctttattcaaagcgttttcttattctcgtttttggctttgtt 897  Q
    ||||||| ||||||||||||||  ||| || ||||  |||||||  |||||||| |||||||||||| | |||||||||||||    
T  11821530 ttggtgagtttttctttgaatgtgtttataattgttatcatcttctttcaaagc-ttttcttattctaggttttggctttgtt 11821611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 216 - 393
Target Start/End: Original strand, 11813805 - 11813982
Alignment:
Q  216 gaaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaagg 315  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |   ||    
T  11813805 gaaatatgtgttaccataatatgattgaaattaatttgataagagaagaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagggg 11813904  T
Q  316 aggtgtgatgcccatctccaccatccaaatcttttttcgtacttgaaactgcatgtggtacaaaaaagacaattgttt 393  Q
    |||| ||||| | ||||||||||| |||   ||  ||  || ||||||||||||||||||||||||||||||| ||||    
T  11813905 aggtatgatgtcgatctccaccattcaatatttcattaataattgaaactgcatgtggtacaaaaaagacaatagttt 11813982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 221 - 384
Target Start/End: Original strand, 11808266 - 11808429
Alignment:
Q  221 atgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggaggtg 320  Q
    |||||| |||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||| ||||||| |||     
T  11808266 atgtgttaccatagtgtgactaaaattaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccgtcgaaggtggtc 11808365  T
Q  321 tgatgcccatctccaccatccaaatcttttttcgtacttgaaactgcatgtggtacaaaaaaga 384  Q
    |||||| |||||| ||||| ||| | ||| || ||| ||||||||||| |||||||||||||||    
T  11808366 tgatgctcatctctaccattcaattttttattagtaattgaaactgcacgtggtacaaaaaaga 11808429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 11807904 - 11808027
Alignment:
Q  9 ctctcttgtcatgaacccaattgccattgaaatagtcacattgtttctcttgaggtttttccttttctgccaaaaatgaaaagaataattaggtcaagtg 108  Q
    |||||||||||||||||||||||||| | ||||||||||||  ||||||  |||||||||||||||||||||||||||||||||||||| ||||| | |     
T  11807904 ctctcttgtcatgaacccaattgccaattaaatagtcacatgatttctcaagaggtttttccttttctgccaaaaatgaaaagaataatcaggtctacta 11808003  T
Q  109 aattgtcgaatataaacaagattt 132  Q
    |||||  ||||| |||||||||||    
T  11808004 aattgatgaatagaaacaagattt 11808027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 217 - 384
Target Start/End: Original strand, 11816388 - 11816555
Alignment:
Q  217 aaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaagga 316  Q
    |||||||| | | |||||| | |||||||||| ||||||||| ||||||||||||||||||||||||| | | ||||||||||||||||||| |  || |    
T  11816388 aaatatgtattatcataatatcattgaaattaatttgataagtgaagaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagaa 11816487  T
Q  317 ggtgtgatgcccatctccaccatccaaatcttttttcgtacttgaaactgcatgtggtacaaaaaaga 384  Q
    ||| ||||| ||||||||||||| ||| | ||  ||  || |||||||||||||||||||||||||||    
T  11816488 ggtatgatgtccatctccaccattcaatttttcattaataattgaaactgcatgtggtacaaaaaaga 11816555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 216 - 409
Target Start/End: Original strand, 11819923 - 11820116
Alignment:
Q  216 gaaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaagg 315  Q
    ||||||||||| || ||||| ||||| |||||| ||||||| ||||||||| |||||||| || ||||| | | | |||||||| |||||||| || |||    
T  11819923 gaaatatgtgttactataatatgattaaaattaatttgataggagaagaaattgttgtaaaacatacttggatccacttccgtggagtttccaccggagg 11820022  T
Q  316 aggtgtgatgcccatctccaccatccaaatcttttttcgtacttgaaactgcatgtggtacaaaaaagacaattgtttagaatacgcagtagaa 409  Q
    |||| |||||| |||||||||||| ||| ||||  ||  || |||||||||||||||||| ||||| |||||| ||||||| ||| || |||||    
T  11820023 aggtatgatgctcatctccaccattcaattcttcattaataattgaaactgcatgtggtataaaaatgacaatagtttagattacacaatagaa 11820116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 217 - 393
Target Start/End: Original strand, 11814926 - 11815102
Alignment:
Q  217 aaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaagga 316  Q
    |||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||| |    ||    
T  11814926 aaatatgtgttaccataatatgattgaaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccaccaggaga 11815025  T
Q  317 ggtgtgatgcccatctccaccatccaaatcttttttcgtacttgaaactgcatgtggtacaaaaaagacaattgttt 393  Q
    ||| ||||| ||||||||||||| ||    ||  ||  || ||||||||||||| |||| |||||||||||| ||||    
T  11815026 ggtatgatgtccatctccaccattcagtatttcattaataattgaaactgcatgcggtataaaaaagacaatagttt 11815102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 219 - 343
Target Start/End: Original strand, 11820904 - 11821028
Alignment:
Q  219 atatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggagg 318  Q
    |||||||| |||||| | ||| | |||||  ||| || |||||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||||    
T  11820904 atatgtgttaccatagtatgactaaaattgattttattagagaagaaagtgttgtaacacgtacttagatcctcttccgtgaagttcccatcgaaggagg 11821003  T
Q  319 tgtgatgcccatctccaccatccaa 343  Q
    |  ||||||||||||||||||||||    
T  11821004 tccgatgcccatctccaccatccaa 11821028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 219 - 388
Target Start/End: Original strand, 11811278 - 11811451
Alignment:
Q  219 atatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggagg 318  Q
    |||||||| |||||| ||||| | |||||  |||||||| ||||||||||||| |||||||||||| | ||||||| |||||||||||||||  ||||||    
T  11811278 atatgtgttaccatattgtgactaaaattgatttgataaaagaagaaagtgttataacacgtacttggattctctttcgtgaagtttccatcagaggagg 11811377  T
Q  319 tgtgatgcccatctccaccatcca----aatcttttttcgtacttgaaactgcatgtggtacaaaaaagacaat 388  Q
    | ||| | |||||| |||||| ||     || ||||||  || |||||||| ||||||||||||||| ||||||    
T  11811378 tctgacgtccatctgcaccattcatttttattttttttaataattgaaactacatgtggtacaaaaatgacaat 11811451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 221 - 396
Target Start/End: Original strand, 11808678 - 11808855
Alignment:
Q  221 atgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggaggtg 320  Q
    |||||| ||||| || ||||| |||||| |||| ||||| |||||||||||||||||||||||| ||| |||||  ||| | |||||| |  |||||||     
T  11808678 atgtgttaccattatatgatttaaattaatttggtaagacaagaaagtgttgtaacacgtacttggttcctcttttgtggaatttccaccagaggaggta 11808777  T
Q  321 tgatgcccatctccaccatccaaatcttttttcgtacttgaaactgcatgtggtac--aaaaaagacaattgtttaga 396  Q
    ||| ||||||||||||||| ||| | ||  ||  ||  ||||||||||||| ||||  ||||||||||||||||||||    
T  11808778 tgacgcccatctccaccattcaatttttcattgataaatgaaactgcatgttgtaccaaaaaaagacaattgtttaga 11808855  T

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Target: chr7; HSP #11
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 216 - 382
Target Start/End: Original strand, 11810331 - 11810497
Alignment:
Q  216 gaaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaagg 315  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||| ||| | ||||||||||||||| | |||||||| || |||||||||    |||    
T  11810331 gaaatatgtgttaccataatatgattgaaattaatttgataagagaataaaatattgtaacacgtacttagattctcttctgtaaagtttccactagagg 11810430  T
Q  316 aggtgtgatgcccatctccaccatccaaatcttttttcgtacttgaaactgcatgtggtacaaaaaa 382  Q
    ||   ||||||| ||||||||||  |||   ||  ||  || |||||||||||||||||||||||||    
T  11810431 agaaatgatgccgatctccaccaatcaatatttcattaataattgaaactgcatgtggtacaaaaaa 11810497  T

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Target: chr7; HSP #12
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 515 - 581
Target Start/End: Original strand, 11819554 - 11819620
Alignment:
Q  515 ccctcaaaaatatcgatcaaattctaaccctaacaatttttataattctctataatttcaaacatca 581  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  11819554 ccctaaaaaatatcgatcaaattctaacactaacaatttttataattctctataatttcaaagatca 11819620  T

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Target: chr7; HSP #13
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 216 - 384
Target Start/End: Original strand, 11811986 - 11812154
Alignment:
Q  216 gaaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaagg 315  Q
    |||||| |||| |||||||| |||||||||||| ||||| || |||||||| ||||||||||| ||||| | ||||||||||| |||||||||    |||    
T  11811986 gaaatacgtgttaccataatatgattgaaattaatttgaaaacagaagaaaatgttgtaacacatacttggattctcttccgtaaagtttccacttgagg 11812085  T
Q  316 aggtgtgatgcccatctccaccatccaaatcttttttcgtacttgaaactgcatgtggtacaaaaaaga 384  Q
    |||| || ||||||||||||  || |||   ||  ||  || ||||| |||||||||||||||||||||    
T  11812086 aggtatggtgcccatctccatgattcaatatttcattaataattgaatctgcatgtggtacaaaaaaga 11812154  T

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Target: chr7; HSP #14
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 250 - 388
Target Start/End: Original strand, 11815905 - 11816044
Alignment:
Q  250 tttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggaggtgtgatgcccatctccaccatccaa-atctt 348  Q
    ||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||    |||||||  || |||||||| |||||| |||  | ||    
T  11815905 tttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccactagaggaggtccgacgcccatctgcaccattcaatgtgtt 11816004  T
Q  349 ttttcgtacttgaaactgcatgtggtacaaaaaagacaat 388  Q
    ||||  || || ||||| ||||||||||||||||||||||    
T  11816005 ttttaataattaaaactacatgtggtacaaaaaagacaat 11816044  T

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Target: chr7; HSP #15
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 448 - 534
Target Start/End: Original strand, 11816589 - 11816676
Alignment:
Q  448 taaaatatctataaattaagtgacacacacaaacaaaaaagaactttgagttataaatagaag-aggtccctcaaaaatatcgatcaa 534  Q
    |||| |||||||||||||||||||||||||||||||||| ||| ||||| || || ||||||| || ||||| |||||||||||||||    
T  11816589 taaagtatctataaattaagtgacacacacaaacaaaaatgaaatttgaattgtacatagaagaagttccctaaaaaatatcgatcaa 11816676  T

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Target: chr7; HSP #16
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 427 - 532
Target Start/End: Original strand, 11815154 - 11815259
Alignment:
Q  427 actcccaaaattttcttcttctaaaatatctataaattaagtgacacacacaaacaaaaaagaactttgagttataaatagaagaggtccc-tcaaaaat 525  Q
    ||||||||| |||||||| | |||| |||||||||||||||||||||||||||| | ||||||| ||||| || || |||| ||||||||| | ||||||    
T  11815154 actcccaaa-ttttcttcctataaagtatctataaattaagtgacacacacaaagacaaaagaaatttgaattgtacatagtagaggtcccttaaaaaat 11815252  T
Q  526 atcgatc 532  Q
    |||||||    
T  11815253 atcgatc 11815259  T

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Target: chr7; HSP #17
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 434 - 534
Target Start/End: Original strand, 11812221 - 11812322
Alignment:
Q  434 aaattttcttcttctaaaatatctataaattaagtgacacacacaaacaaaaaagaactttgagttataaatagaagaggt-ccctcaaaaatatcgatc 532  Q
    ||||||||||| | || ||||||||||||||| ||||||||  |||||||||||||| ||||| || || ||||||||| | |||| |||||||||||||    
T  11812221 aaattttcttcctatacaatatctataaattaggtgacacaagcaaacaaaaaagaaatttgaattgtacatagaagagatcccctaaaaaatatcgatc 11812320  T
Q  533 aa 534  Q
    ||    
T  11812321 aa 11812322  T

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Target: chr7; HSP #18
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 382
Target Start/End: Original strand, 11809659 - 11809786
Alignment:
Q  255 taagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggaggtgtgatgcccatctccaccatccaaatcttttttcg 354  Q
    |||||||||||||||||||||||||||||| | |  |||| |||||||||||||    ||||||| ||| |||||||| ||| || ||| |  |||||      
T  11809659 taagagaagaaagtgttgtaacacgtacttggatcatctttcgtgaagtttccactataggaggtctgacgcccatctgcactattcaatttatttttaa 11809758  T
Q  355 tacttgaaactgcatgtggtacaaaaaa 382  Q
    || |||||||| ||||||||||||||||    
T  11809759 taattgaaactacatgtggtacaaaaaa 11809786  T

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Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 427 - 516
Target Start/End: Original strand, 11814034 - 11814122
Alignment:
Q  427 actcccaaaattttcttcttctaaaatatctataaattaagtgacacacacaaacaaaaaagaactttgagttataaatagaagaggtcc 516  Q
    ||||||||| |||||||| | |||| |||||||||||||||||||| ||||||||| ||||||| ||| | || || |||||||||||||    
T  11814034 actcccaaa-ttttcttcctataaagtatctataaattaagtgacatacacaaacacaaaagaaattttaattgtacatagaagaggtcc 11814122  T

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Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 11812870 - 11812990
Alignment:
Q  219 atatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggagg 318  Q
    |||||||| |||||| ||||| | |||||  ||||||||||||||||||| |  |||| ||||||| | | || || |||||||||||||| | ||||||    
T  11812870 atatgtgttaccatattgtgactaaaattgatttgataagagaagaaagtatactaactcgtacttggatcctgtttcgtgaagtttccattggaggagg 11812969  T
Q  319 tgtgatgcccatctccaccat 339  Q
    | ||| |||||||| ||||||    
T  11812970 tctgaggcccatctgcaccat 11812990  T

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Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 482 - 560
Target Start/End: Original strand, 11821190 - 11821268
Alignment:
Q  482 aaaaaagaactttgagttataaatagaagaggtccctcaaaaatatcgatcaaattctaaccctaacaatttttataat 560  Q
    |||||| |||||||| || || |||||||    |||||||||||||||||||||||||||| ||||||||| |||||||    
T  11821190 aaaaaaaaactttgaattgtacatagaagttccccctcaaaaatatcgatcaaattctaacactaacaattattataat 11821268  T

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Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 520 - 600
Target Start/End: Original strand, 11809980 - 11810060
Alignment:
Q  520 aaaaatatcgatcaaattctaaccctaacaatttttataattctctataatttcaaacatcacaattaatctacaatttaa 600  Q
    |||||||||||||||||||| || | ||||||||||| ||||||| ||||||| ||| ||||  || |||||| |||||||    
T  11809980 aaaaatatcgatcaaattcttacaccaacaatttttacaattctccataattttaaagatcatcataaatctagaatttaa 11810060  T

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Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 434 - 533
Target Start/End: Original strand, 11810566 - 11810666
Alignment:
Q  434 aaattttcttcttctaaaatatctataaattaagtgacacacacaaacaaaaaagaactttgagttataaatagaagagg-tccctcaaaaatatcgatc 532  Q
    ||||||||||| | |||| |||| ||||| || ||||||| |||||||||||||||| ||||| || || | |||||||| || || |||||||||||||    
T  11810566 aaattttcttcatataaagtatcaataaaataggtgacactcacaaacaaaaaagaaatttgaattgtacaaagaagaggttctctaaaaaatatcgatc 11810665  T
Q  533 a 533  Q
    |    
T  11810666 a 11810666  T

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Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 11809564 - 11809611
Alignment:
Q  148 ccataacatagccgcaattgatttgatgttgcatcccctaatgtttac 195  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  11809564 ccataacatggtcgcaattgatttgatgttgtatcccctaatgtttac 11809611  T

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Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 427 - 533
Target Start/End: Original strand, 11820151 - 11820257
Alignment:
Q  427 actcccaaaattttcttcttctaaaatatctataaattaagtgacacacacaaacaaaaaagaactttgagttataaatagaagaggt-ccctcaaaaat 525  Q
    ||||||||| |||||||| | |||| ||||||||||||||||| | |||||||||||||| | | ||||| || || ||||| ||||| |||| ||| ||    
T  11820151 actcccaaa-ttttcttcctataaagtatctataaattaagtggcgcacacaaacaaaaatgtaatttgaattttatatagacgaggtcccctaaaagat 11820249  T
Q  526 atcgatca 533  Q
    ||||||||    
T  11820250 atcgatca 11820257  T

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Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 457 - 534
Target Start/End: Original strand, 11808930 - 11809008
Alignment:
Q  457 tataaattaagtgacacacacaaacaaaaaagaactttgagttataaatagaagaggtccc-tcaaaaatatcgatcaa 534  Q
    ||||||||||||||||||| ||| ||||||  |  ||||| || || |||||||||||||| | |||||||||||||||    
T  11808930 tataaattaagtgacacactcaatcaaaaacaatatttgaattgtacatagaagaggtcccttaaaaaatatcgatcaa 11809008  T

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Target: chr5 (Bit Score: 131; Significance: 2e-67; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 625 - 898
Target Start/End: Complemental strand, 15273821 - 15273545
Alignment:
Q  625 aagatggatttcactagacactagcaaaggtacattgctagtgagtttaccttttctcaaaggaggggaagcaaaaagtgaagattggtgag---tgatg 721  Q
    |||||||| |||| | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||   |||||    
T  15273821 aagatggaattcaatggacactagcaaaggtacagtgctagtgagttcaccttttctcaaaggaggggaagaagaaagtgaagattggtgagggatgatg 15273722  T
Q  722 gaagtgaaaattggagcaaataagtggaagtaaaagtatagacaaattagagctaaaggtagtagtgaatagaaaattgagggcacaaatgttttggtga 821  Q
    | |||||||| |||||||||| ||||||||||||||||||| |||| |||||||| | |||  || ||||||||||||||||| |||||| |||||||||    
T  15273721 ggagtgaaaaatggagcaaatgagtggaagtaaaagtataggcaaaatagagctacaagtaacagcgaatagaaaattgagggaacaaatattttggtga 15273622  T
Q  822 atttttctttgaatggttttgtagttgtggtcatctttattcaaagcgttttcttattctcgtttttggctttgttc 898  Q
     ||||||||||||||  |||||| ||||   ||||||  ||||||| |||||| |||| ||  ||||||||||||||    
T  15273621 gtttttctttgaatgtgtttgtaattgttaccatcttctttcaaagtgttttcctattgtcccttttggctttgttc 15273545  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 515 - 576
Target Start/End: Complemental strand, 15273881 - 15273820
Alignment:
Q  515 ccctcaaaaatatcgatcaaattctaaccctaacaatttttataattctctataatttcaaa 576  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  15273881 ccctcaaaaatatcgatcaaattctaacactaataatttttataattctctataatttcaaa 15273820  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 15274379 - 15274306
Alignment:
Q  9 ctctcttgtcatgaacccaattgccattgaaatagtcacattgtttctcttgaggtttttccttttctgccaaa 82  Q
    |||||||||||| || ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  15274379 ctctcttgtcattaatccaattgccattgaaatagtcacatggtttctcatgaggtttttccctttctgccaaa 15274306  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 692 - 741
Target Start/End: Complemental strand, 51381602 - 51381553
Alignment:
Q  692 gaagcaaaaagtgaagattggtgagtgatggaagtgaaaattggagcaaa 741  Q
    |||||| |||||||||| ||||||||||||| | |||||| |||||||||    
T  51381602 gaagcagaaagtgaagagtggtgagtgatggtactgaaaaatggagcaaa 51381553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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