View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418-Insertion-10 (Length: 727)

Name: NF5418-Insertion-10
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418-Insertion-10
NF5418-Insertion-10
[»] chr5 (3 HSPs)
chr5 (474-727)||(28532777-28533029)
chr5 (358-476)||(28533069-28533187)
chr5 (644-689)||(41900503-41900548)
[»] chr3 (3 HSPs)
chr3 (358-468)||(51763081-51763191)
chr3 (633-691)||(51763388-51763446)
chr3 (633-690)||(51113195-51113252)
[»] chr6 (12 HSPs)
chr6 (400-474)||(6587982-6588056)
chr6 (633-691)||(6593929-6593987)
chr6 (633-689)||(6423907-6423963)
chr6 (505-575)||(6588144-6588214)
chr6 (634-687)||(6410699-6410752)
chr6 (344-390)||(14810035-14810081)
chr6 (633-687)||(19633104-19633158)
chr6 (634-691)||(6417092-6417149)
chr6 (641-690)||(6596241-6596290)
chr6 (632-673)||(7132323-7132364)
chr6 (632-673)||(7135246-7135287)
chr6 (632-673)||(7138169-7138210)
[»] chr4 (5 HSPs)
chr4 (632-691)||(553759-553818)
chr4 (344-391)||(1537252-1537299)
chr4 (636-691)||(21833278-21833333)
chr4 (340-437)||(53759964-53760058)
chr4 (344-396)||(1547374-1547426)
[»] chr7 (4 HSPs)
chr7 (632-691)||(10615713-10615772)
chr7 (344-393)||(15091285-15091334)
chr7 (632-692)||(10169047-10169107)
chr7 (632-692)||(10176572-10176632)
[»] chr8 (1 HSPs)
chr8 (646-690)||(32151969-32152013)
[»] chr1 (2 HSPs)
chr1 (627-691)||(7555198-7555262)
chr1 (632-689)||(19467428-19467485)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 474 - 727
Target Start/End: Complemental strand, 28533029 - 28532777
Alignment:
Q  474 cctacgtagcctcttcaaaaggttcacccatctcaattccctcaatctctctcgctatctcggtcacaacctcgacgaccttctctgccaaatctctcgt 573  Q
    ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||  |     
T  28533029 cctacttagcctcttcaaaaggttcacccatctcaatttcctcgatctctctcgctatctaggtaacaacctcgacgaccttctctgccaaatctca-ga 28532931  T
Q  574 tttctcgtcgttcaaattcacttcactcaaactcccaaacgttggtaaccacttcccagcaaatggattgcgagctttttcacaaaacattacaactttg 673  Q
    |||| |||| |||||| ||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532930 tttcccgtcattcaaaatcatttcactcaaacttccaaacgttggtaaccgcttcccagcaaatggattgcgagctttttcacaaaacattacaactttg 28532831  T
Q  674 acctctttcacttgttccggctttgttaacctatttcttatcgcagaatgtttc 727  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532830 acctctttcacttgttccggctttgttaacctatttcttatcgcagaatgtttc 28532777  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 358 - 476
Target Start/End: Complemental strand, 28533187 - 28533069
Alignment:
Q  358 tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc 457  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28533187 tgttgggaatgtatcttcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcaacttgagttctctctccaccgtatccaaacggttcc 28533088  T
Q  458 tctccatcaccggccgcct 476  Q
    ||||||||||||| |||||    
T  28533087 tctccatcaccggacgcct 28533069  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 689
Target Start/End: Original strand, 41900503 - 41900548
Alignment:
Q  644 cgagctttttcacaaaacattacaactttgacctctttcacttgtt 689  Q
    |||||||||||  |||| |||||||||||||||||| |||||||||    
T  41900503 cgagctttttccaaaaagattacaactttgacctctctcacttgtt 41900548  T

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Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 468
Target Start/End: Original strand, 51763081 - 51763191
Alignment:
Q  358 tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc 457  Q
    |||||||||| ||| |||| ||||||||||||| | | |   |||||| | ||||||||||||| ||||| ||||||||||| ||| ||||||| |||||    
T  51763081 tgttgggaatctatcttcaaattcatcatcaacaatgatgatgacgaagaaaacaaccgtcgcaacttgaattctctctccatcgtttccaaacagttcc 51763180  T
Q  458 tctccatcacc 468  Q
    |||||||||||    
T  51763181 tctccatcacc 51763191  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 633 - 691
Target Start/End: Original strand, 51763388 - 51763446
Alignment:
Q  633 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 691  Q
    ||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||||||||    
T  51763388 caaatgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgttcc 51763446  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 690
Target Start/End: Original strand, 51113195 - 51113252
Alignment:
Q  633 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 690  Q
    ||||||||||||||||||| ||  |||| ||||||||| |||||||| ||||||||||    
T  51113195 caaatggattgcgagctttctcggaaaatattacaactctgacctctctcacttgttc 51113252  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 6587982 - 6588056
Alignment:
Q  400 gacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcctctccatcaccggccgc 474  Q
    ||||||||||||||||||| |||| ||| |||||||||| |||||||||| | ||||||| ||||||||| ||||    
T  6587982 gacgaaaacaacaaccgtcacagcatgatttctctctccgccgtatccaagcagttcctcgccatcaccgaccgc 6588056  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 633 - 691
Target Start/End: Original strand, 6593929 - 6593987
Alignment:
Q  633 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 691  Q
    ||||||| ||||||| ||| |||||||| |||||||||||||||||||||| |||||||    
T  6593929 caaatggtttgcgagttttctcacaaaagattacaactttgacctctttcaattgttcc 6593987  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 689
Target Start/End: Complemental strand, 6423963 - 6423907
Alignment:
Q  633 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgtt 689  Q
    ||||||| ||||||||||| || |||||||| ||||||||||||||| |||||||||    
T  6423963 caaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 505 - 575
Target Start/End: Original strand, 6588144 - 6588214
Alignment:
Q  505 ctcaattccctcaatctctctcgctatctcggtcacaacctcgacgaccttctctgccaaatctctcgttt 575  Q
    |||| ||||||||||||||| || |||  |||| |  |||||||||||||||| |||||||||||||||||    
T  6588144 ctcacttccctcaatctctcgcgatatagcggttatgacctcgacgaccttctttgccaaatctctcgttt 6588214  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 687
Target Start/End: Complemental strand, 6410752 - 6410699
Alignment:
Q  634 aaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttg 687  Q
    |||||| |||| || ||| || ||||||||||||||||||||||||||||||||    
T  6410752 aaatgggttgcaagttttctcccaaaacattacaactttgacctctttcacttg 6410699  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 14810081 - 14810035
Alignment:
Q  344 atttacctgatgagtgttgggaatgtatattcagattcatcatcaac 390  Q
    ||||||||||||||||||||||| || | || |||||||||||||||    
T  14810081 atttacctgatgagtgttgggaacgtgtctttagattcatcatcaac 14810035  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 687
Target Start/End: Complemental strand, 19633158 - 19633104
Alignment:
Q  633 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttg 687  Q
    ||||||| ||||||||||| ||  ||| ||||||||||||||||||| |||||||    
T  19633158 caaatgggttgcgagctttctccgaaagcattacaactttgacctctctcacttg 19633104  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 691
Target Start/End: Complemental strand, 6417149 - 6417092
Alignment:
Q  634 aaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 691  Q
    |||||| || |||||||| || ||||| | |||||||||||||||| |||||||||||    
T  6417149 aaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 690
Target Start/End: Original strand, 6596241 - 6596290
Alignment:
Q  641 ttgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 690  Q
    ||||||| ||| || |||||||| ||||||||||||||| ||||||||||    
T  6596241 ttgcgagttttctcccaaaacataacaactttgacctctctcacttgttc 6596290  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 673
Target Start/End: Complemental strand, 7132364 - 7132323
Alignment:
Q  632 gcaaatggattgcgagctttttcacaaaacattacaactttg 673  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7132364 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 673
Target Start/End: Complemental strand, 7135287 - 7135246
Alignment:
Q  632 gcaaatggattgcgagctttttcacaaaacattacaactttg 673  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7135287 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 673
Target Start/End: Complemental strand, 7138210 - 7138169
Alignment:
Q  632 gcaaatggattgcgagctttttcacaaaacattacaactttg 673  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7138210 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 632 - 691
Target Start/End: Complemental strand, 553818 - 553759
Alignment:
Q  632 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 691  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||| |||| ||||||    
T  553818 gcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctcacctgttcc 553759  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 1537252 - 1537299
Alignment:
Q  344 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacg 391  Q
    |||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  1537252 atttacctgatgagtgttgggaatgtgtattcagattcctcaacaacg 1537299  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 636 - 691
Target Start/End: Original strand, 21833278 - 21833333
Alignment:
Q  636 atggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 691  Q
    |||| ||||||| |||| ||||||||||||| |||||||||||| |||||||||||    
T  21833278 atgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttcc 21833333  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 340 - 437
Target Start/End: Original strand, 53759964 - 53760058
Alignment:
Q  340 tcagatttacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctc 437  Q
    |||||||||||||||||||| ||||||| ||| |||| | || |||||||| ||   | |||| ||||||||||||||| || ||||| |||||||||    
T  53759964 tcagatttacctgatgagtgctgggaatctatcttcaaactcgtcatcaacaac---aaggacaaaaacaacaaccgtcacaacttgaattctctctc 53760058  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 1547374 - 1547426
Alignment:
Q  344 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggt 396  Q
    |||||||||| ||||||||||||| ||| |||| ||||||||||| |||||||    
T  1547374 atttacctgacgagtgttgggaatctatcttcaaattcatcatcatcgacggt 1547426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 632 - 691
Target Start/End: Complemental strand, 10615772 - 10615713
Alignment:
Q  632 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 691  Q
    |||||||| || |||||||| || ||||| |||||||||||||||||| |||||||||||    
T  10615772 gcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcc 10615713  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 15091285 - 15091334
Alignment:
Q  344 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgac 393  Q
    ||||||| |||||||||||||||||  | |||||||||||||||||||||    
T  15091285 atttacccgatgagtgttgggaatgcgtcttcagattcatcatcaacgac 15091334  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 632 - 692
Target Start/End: Original strand, 10169047 - 10169107
Alignment:
Q  632 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccg 692  Q
    |||||||| ||||||| ||| || ||||| |||| ||||||||||||| ||||||||||||    
T  10169047 gcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccg 10169107  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 632 - 692
Target Start/End: Original strand, 10176572 - 10176632
Alignment:
Q  632 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccg 692  Q
    |||||||| ||||||| ||| || ||||| |||| ||||||||||||| ||||||||||||    
T  10176572 gcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccg 10176632  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 646 - 690
Target Start/End: Complemental strand, 32152013 - 32151969
Alignment:
Q  646 agctttttcacaaaacattacaactttgacctctttcacttgttc 690  Q
    |||||| || |||||||||||||||||||||||| ||||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttc 32151969  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 691
Target Start/End: Complemental strand, 7555262 - 7555198
Alignment:
Q  627 tcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 691  Q
    |||| |||| ||||||||||||||| || ||||| ||||||||||| |||||  |||||||||||    
T  7555262 tccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 7555198  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 689
Target Start/End: Original strand, 19467428 - 19467485
Alignment:
Q  632 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgtt 689  Q
    |||||||| ||||||| |||  | ||||| |||||||||||||||||| |||||||||    
T  19467428 gcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtt 19467485  T

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