View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418-Insertion-11 (Length: 645)

Name: NF5418-Insertion-11
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418-Insertion-11
NF5418-Insertion-11
[»] chr4 (8 HSPs)
chr4 (7-628)||(36296617-36297257)
chr4 (107-628)||(35097324-35097838)
chr4 (312-628)||(35072844-35073166)
chr4 (313-628)||(35106695-35107016)
chr4 (537-628)||(35098036-35098127)
chr4 (495-629)||(36940638-36940772)
chr4 (475-590)||(36935979-36936094)
chr4 (543-627)||(36961300-36961384)
[»] chr6 (2 HSPs)
chr6 (303-628)||(24014343-24014668)
chr6 (312-628)||(24040900-24041216)
[»] chr1 (1 HSPs)
chr1 (278-624)||(3122884-3123225)


Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 7 - 628
Target Start/End: Complemental strand, 36297257 - 36296617
Alignment:
Q  7 atagtttttcttctaaacataacttaaatttttccaacccaagtgtataaattttatttgtttttgctaaagaaaaaacattgccttttctttacaaccc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36297257 atagtttttcttctaaacataacttaaatttttccaacccaagtgtttaaattttatttgtttttgctaaagaaaaaacattgccttttctttacaaccc 36297158  T
Q  107 -------------------gcaatctctagagtgttctcgggctatatagagaatccccgaatatttccaaaattagtaatttctggaaattacacgatg 187  Q
                       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36297157 attttgggtgaaccccgtagcaatctctagagtgttctcgggctatatagagaatccccgaatatttccaaaattagtaatttctggaaattacacgatg 36297058  T
Q  188 attcctccatctagtttatatacctgtcgcctgcgaagcaggttattcacactaagcgttgagagtaattagcaattacattccattctattctcaattt 287  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36297057 attcttccatctagtttatatacccgtcgcctgcgaagcaggttattcacactaagcattgagagtaattagcaattacattccattctattctcaattt 36296958  T
Q  288 acagagttctaaaatcttcatcaaaatgtcgctgattccaagttcctttggtggccgaaggagcaacgttttcgatccattctcccttgatgtttgggat 387  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36296957 acagagttctaaaatcttcatcaaaatgtcgctgattccaagtttctttggtggccgaaggagcaacgttttcgatccattctcccttgatgtttgggat 36296858  T
Q  388 ccctttaaggatttttcatttcccaattctgcactttctgcttcttcatttcctcaggagaattctgcttttgtgagcaccagaattgattggaaggaga 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36296857 ccctttaaggatttttcatttcccaattctgcactttctgcttcttcatttcctcaggagaattctgcttttgtgagcaccaggattgattggaaggaga 36296758  T
Q  488 ccccagaagcacacgtgtttaacgctgatcttcttggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggaga 587  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36296757 ccccagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcagattagtggaga 36296658  T
Q  588 gaggaacgttgagaaagaagacaagaacaatcaatggcatc 628  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  36296657 gaggaacgttgagaaagaagacaagaacaaccaatggcatc 36296617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 107 - 628
Target Start/End: Original strand, 35097324 - 35097838
Alignment:
Q  107 gcaatctctagagtgttctcgggctatatagagaatccccgaatatttccaaaattagtaa-tttctggaaattacacgatgattcctccatctagttta 205  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||  ||||| || |||||||||||||    
T  35097324 gcaatatctagagtgttctcgggctatatagagaaaccccgaatatttcgaaaattagtaaatttctagaaattacgtgatgactcttccatctagttta 35097423  T
Q  206 tatacctgtcgcctgcgaagcaggttattcacactaagcgttgagagtaattagcaattacattccattctattctcaatttacagagttctaaaatctt 305  Q
    |||||| || |||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||     |||||||||| ||||||||||| ||    
T  35097424 tatacccgttgcctgcaaagcaggtcattcacactaagcattgagagtaattagcaattacattccattc-----tcaatttacacagttctaaaatttt 35097518  T
Q  306 catcaaaatgtcgctgattccaagttcctttggtggccgaaggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttttca 405  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||  ||| ||||||||||| ||||| |||||||||||||| ||||||||| ||    
T  35097519 catcaaaatgtcgttgattccaagtttctttggtggccgaaggagcaacacttttgatccattctctcttgacgtttgggatcccttcaaggattttcca 35097618  T
Q  406 tttcccaattctgcactttctgcttcttcatttcctcaggagaattctgcttttgtgagcaccagaattgattggaaggagaccccagaagcacacgtgt 505  Q
    ||  |||||||| |||||||||   ||||||| ||||  ||||||||||| ||||  |||||   | | |||||||||||||||||||||||||| ||||    
T  35097619 ttctccaattcttcactttctg---cttcattccctcgtgagaattctgcatttgcaagcacacaagtggattggaaggagaccccagaagcacatgtgt 35097715  T
Q  506 ttaacgctgatcttcttggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaacgttgagaaaga 605  Q
    |  | |||||||||| |||||||||||||||||||||||||||||||||||||| ||| || ||||||| ||| || ||||||||||| |||||||||||    
T  35097716 tcgaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaaga 35097815  T
Q  606 agacaagaacaatcaatggcatc 628  Q
    ||| |||||| ||||||||||||    
T  35097816 agataagaacgatcaatggcatc 35097838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 312 - 628
Target Start/End: Complemental strand, 35073166 - 35072844
Alignment:
Q  312 aatgtcgctgattccaagttcctttggtggccga------aggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttttca 405  Q
    |||||||||||||||||||| |||||||||||||      |||||||||||||||||||||||||||||||| || ||||| || || ||||||||| |     
T  35073166 aatgtcgctgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtgtgggacccattcaaggattttcct 35073067  T
Q  406 tttcccaattctgcactttctgcttcttcatttcctcaggagaattctgcttttgtgagcaccagaattgattggaaggagaccccagaagcacacgtgt 505  Q
    ||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||    
T  35073066 ttcaccaattcttcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgt 35072967  T
Q  506 ttaacgctgatcttcttggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaacgttgagaaaga 605  Q
    | || |||||||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || || ||||||||| |||| |||||    
T  35072966 tcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacattgaaaaaga 35072867  T
Q  606 agacaagaacaatcaatggcatc 628  Q
    ||| |||||  ||||||||||||    
T  35072866 agataagaatgatcaatggcatc 35072844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 313 - 628
Target Start/End: Original strand, 35106695 - 35107016
Alignment:
Q  313 atgtcgctgattccaagttcctttggtggcc------gaaggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttttcat 406  Q
    |||||| |||||||||||| |||||||||||      |||||||||||||||||||||||||||||||||| |||||||| || || ||||||||| | |    
T  35106695 atgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttgggacccattcaaggattttcctt 35106794  T
Q  407 ttcccaattctgcactttctgcttcttcatttcctcaggagaattctgcttttgtgagcaccagaattgattggaaggagaccccagaagcacacgtgtt 506  Q
    |  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||    
T  35106795 tcaccaattcttcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgtt 35106894  T
Q  507 taacgctgatcttcttggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaacgttgagaaagaa 606  Q
     || |||||||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || || ||||||||| |||| ||||||    
T  35106895 caaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaactttgaaaaagaa 35106994  T
Q  607 gacaagaacaatcaatggcatc 628  Q
    || |||||  ||||||||||||    
T  35106995 gataagaatgatcaatggcatc 35107016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 537 - 628
Target Start/End: Original strand, 35098036 - 35098127
Alignment:
Q  537 agaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaacgttgagaaagaagacaagaacaatcaatggcatc 628  Q
    ||||||||||||||||||||||| ||| || ||||||| ||| || ||||||||||| |||||||||||||| |||||| ||||||||||||    
T  35098036 agaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatc 35098127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 495 - 629
Target Start/End: Complemental strand, 36940772 - 36940638
Alignment:
Q  495 agcacacgtgtttaacgctgatcttcttggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaac 594  Q
    |||||||||||| || |||||| |||  ||| |||||||||| |||| ||| || || ||||||||||| || ||||||| ||| |||||| | || | |    
T  36940772 agcacacgtgttcaatgctgattttccaggaatgaagaaggaggaagcgaaagtagagattgaagatgatagggttcttcagataagtggaaaaagaagc 36940673  T
Q  595 gttgagaaagaagacaagaacaatcaatggcatcc 629  Q
    |||||||||||||| |||||| |||||||||||||    
T  36940672 gttgagaaagaagataagaacgatcaatggcatcc 36940638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 475 - 590
Target Start/End: Complemental strand, 36936094 - 36935979
Alignment:
Q  475 gattggaaggagaccccagaagcacacgtgtttaacgctgatcttcttggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttc 574  Q
    |||||||||||||||||||||| | | ||||| || || |||||||  ||| |||||||||| |||||||| || || ||||||||||| |  |||||||    
T  36936094 gattggaaggagaccccagaagtagatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatatggttcttc 36935995  T
Q  575 ggattagtggagagag 590  Q
     ||| || ||||||||    
T  36935994 agataagcggagagag 36935979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 627
Target Start/End: Original strand, 36961300 - 36961384
Alignment:
Q  543 gaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaacgttgagaaagaagacaagaacaatcaatggcat 627  Q
    |||||| || ||||||| ||| || ||||||| ||| || |||||||| | ||||||||||||||| ||||||||| ||||||||    
T  36961300 gaaggtagagattgaagttgatagggttcttcagatcagcggagagagaagcgttgagaaagaagataagaacaatgaatggcat 36961384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 303 - 628
Target Start/End: Complemental strand, 24014668 - 24014343
Alignment:
Q  303 cttcatcaaaatgtcgctgattccaagttcctttggtggccgaaggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttt 402  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  24014668 cttcttcaaaatgtcgttgattccaagtttctttggtggccgaaggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggatttt 24014569  T
Q  403 tcatttcccaattctgcactttctgcttcttcatttcctcaggagaattctgcttttgtgagcaccagaattgattggaaggagaccccagaagcacacg 502  Q
     | ||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  24014568 cctttaaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagcacatg 24014469  T
Q  503 tgtttaacgctgatcttcttggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaacgttgagaa 602  Q
    |||| || |||||||||| ||||||||||||||| |||||||||||||||||||||| ||| || ||||||| ||| || ||||||||||| ||||||||    
T  24014468 tgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaa 24014369  T
Q  603 agaagacaagaacaatcaatggcatc 628  Q
    |||||| |||||| ||||||||||||    
T  24014368 agaagataagaacgatcaatggcatc 24014343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 312 - 628
Target Start/End: Complemental strand, 24041216 - 24040900
Alignment:
Q  312 aatgtcgctgattccaagttcctttggtggccgaaggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttttcatttccc 411  Q
    |||||||||||||||||||| ||||||||||||||||||||||  ||| |||||||| |||||||| |||||||| ||||| ||||||||| | ||  ||    
T  24041216 aatgtcgctgattccaagtttctttggtggccgaaggagcaacacttttgatccattttcccttgacgtttgggaccccttcaaggattttcctttaacc 24041117  T
Q  412 aattctgcactttctgcttcttcatttcctcaggagaattctgcttttgtgagcaccagaattgattggaaggagaccccagaagcacacgtgtttaacg 511  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| ||||| || |    
T  24041116 aattctgcactttctgcttcttcattccctcaggagaattctgcttttgcgagcaccaggatcgattggaaggagaccccagaagcacatgtgttcaagg 24041017  T
Q  512 ctgatcttcttggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaacgttgagaaagaagacaa 611  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| || || |||||||||||||| |||||||| ||    
T  24041016 ctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataa 24040917  T
Q  612 gaacaatcaatggcatc 628  Q
    |||  ||||||||||||    
T  24040916 gaatgatcaatggcatc 24040900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 5e-67; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 278 - 624
Target Start/End: Original strand, 3122884 - 3123225
Alignment:
Q  278 ttctcaatttacagagttctaaaatcttcatcaaaatgtcgctgattccaagttcctttggtggccgaaggagcaacgttttcgatccattctcccttga 377  Q
    ||||||||||||| |||||| ||  ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||| ||    
T  3122884 ttctcaatttacaaagttctcaa--cttcatcaaaatgtcgctgattccaagtttctttggtggccgaatgagcaacgttttcgatcccttcttcctcga 3122981  T
Q  378 tgtttgggatccctttaaggatttttcatttcccaattctgcactttctgcttcttcatttcctcaggagaattctgcttttgtgagcaccagaattgat 477  Q
     |||||||| ||||| ||||||||| ||||  |||| |||| | ||||||||||   ||| |||   |||||||| || ||||||||||| ||| | ||     
T  3122982 cgtttgggaccccttcaaggattttccattctccaactctgtagtttctgcttc---attccctggtgagaattccgcatttgtgagcacaagagtggac 3123078  T
Q  478 tggaaggagaccccagaagcacacgtgtttaacgctgatcttcttggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcgga 577  Q
    || ||||| || | ||||||||| ||||| || ||||||||||  ||  ||||||||||||| ||||||||||||||||||||||| |  ||||||| ||    
T  3123079 tgaaaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtgaaggttgaaattgaagatgataaggttcttcaga 3123178  T
Q  578 ttagtggagagaggaacgttgagaaagaagacaagaacaatcaatgg 624  Q
    | || ||||| |||| |||||||||||||||||||||| ||| ||||    
T  3123179 taagcggagaaaggaccgttgagaaagaagacaagaacgatcgatgg 3123225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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