View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418-Insertion-12 (Length: 498)
Name: NF5418-Insertion-12
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418-Insertion-12 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 7 - 295
Target Start/End: Complemental strand, 32377796 - 32377519
Alignment:
| Q |
7 |
agaacatgcatatgtgaaagacataaacaaaacaaaaaagttacacaacattataattttcatgtcttcacaaccacaacataatcgcaatcaaggttac |
106 |
Q |
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| T |
32377796 |
agaacatgcatatgtgaaagacataaacaaaacaaaaaagttacacaacattataattttcatgtcttcgcaaccacaacataatcgcaatcaa------ |
32377703 |
T |
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| Q |
107 |
cgcaattctacacaaagtaagagataacgatagtagtaactgcaactgcaatttaaaaccatcagacacgcacatggttaattaactacgtaaccatatt |
206 |
Q |
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| T |
32377702 |
-----ttctacacaaagtaagagatcacgatagtagtaactgcaactgcaatttaaaaccatcagacacgcacatggttaattaactacgtaaccatatt |
32377608 |
T |
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| Q |
207 |
tttcctaggaatattaattttacatcttcatgcatgcaatggatagcatagaagatttcacacacgaagaactagaagatgatcgtaat |
295 |
Q |
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| T |
32377607 |
tttcctaggaatattaattttacatcttcatgcatgcaatggatagcatagaagatttcacacacgaagaactagaagatgatcgtaat |
32377519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 335 - 498
Target Start/End: Complemental strand, 32377479 - 32377316
Alignment:
| Q |
335 |
ctaggactctcatgcatgttaagcactgaagttggtgcagttctagcagtgatacgacgttatcccgaatttactcctgtctacaacatatcttctcctg |
434 |
Q |
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| T |
32377479 |
ctaggactctcatgcatgttaagcactgaagttggtgcagttctagcagtgatacgacgttatcccgaatttactcctgtctacaacatatcttctcctg |
32377380 |
T |
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| Q |
435 |
aagaatcctacgattcttccattattaattctttaaggtctctccgttctctcatattcaatcc |
498 |
Q |
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| T |
32377379 |
aagaatcctacgattcttccattattaattctttaaggtctctccgttctctcatattcaatcc |
32377316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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