View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418-Insertion-14 (Length: 89)

Name: NF5418-Insertion-14
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418-Insertion-14
NF5418-Insertion-14
[»] chr5 (1 HSPs)
chr5 (20-79)||(31572240-31572299)
[»] chr6 (1 HSPs)
chr6 (25-78)||(23902403-23902456)
[»] chr7 (1 HSPs)
chr7 (11-78)||(24729939-24730005)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 31572240 - 31572299
Alignment:
Q  20 tttctgggagcaaagatgcatacaaaacatacaacttcatgcattccaattattgaaaat 79  Q
    |||| ||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||    
T  31572240 tttcggggagcacagatgcatactgaacacacaacttcatgcattccaattattgaaaat 31572299  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 23902456 - 23902403
Alignment:
Q  25 gggagcaaagatgcatacaaaacatacaacttcatgcattccaattattgaaaa 78  Q
    ||||||||||||| ||| | |||||||| |||||  ||||||||||||||||||    
T  23902456 gggagcaaagatgtatatagaacatacagcttcagacattccaattattgaaaa 23902403  T

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Target: chr7 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 24730005 - 24729939
Alignment:
Q  11 acaggggattttctgggagcaaagatgcatacaaaacatacaacttcatgcattccaattattgaaaa 78  Q
    ||||||||||| | || |||| ||||||||||| |||| ||| |||||||||||| ||||| ||||||    
T  24730005 acaggggattt-caggtagcacagatgcatacagaacacacagcttcatgcattcaaattactgaaaa 24729939  T

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