View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418-Insertion-17 (Length: 266)

Name: NF5418-Insertion-17
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418-Insertion-17
NF5418-Insertion-17
[»] chr4 (15 HSPs)
chr4 (8-266)||(38129478-38129736)
chr4 (8-175)||(38125525-38125692)
chr4 (8-164)||(38090691-38090847)
chr4 (70-165)||(37954181-37954276)
chr4 (119-161)||(38061844-38061886)
chr4 (120-161)||(38081982-38082023)
chr4 (8-164)||(36107947-36108103)
chr4 (121-161)||(38058570-38058610)
chr4 (121-158)||(38072898-38072935)
chr4 (121-158)||(38086408-38086445)
chr4 (20-164)||(34971542-34971686)
chr4 (8-164)||(36100688-36100844)
chr4 (10-164)||(21482681-21482835)
chr4 (22-158)||(36080097-36080233)
chr4 (112-164)||(36090232-36090284)
[»] chr7 (2 HSPs)
chr7 (139-266)||(48875700-48875827)
chr7 (53-101)||(48875645-48875693)
[»] chr1 (2 HSPs)
chr1 (154-260)||(2895427-2895533)
chr1 (121-159)||(34268711-34268749)
[»] chr2 (4 HSPs)
chr2 (10-158)||(11933740-11933888)
chr2 (10-158)||(11946961-11947109)
chr2 (64-164)||(8338628-8338728)
chr2 (121-161)||(11811313-11811353)
[»] chr6 (3 HSPs)
chr6 (121-159)||(10792886-10792924)
chr6 (20-164)||(6838720-6838864)
chr6 (121-161)||(7001500-7001540)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 38129478 - 38129736
Alignment:
Q  8 ggtatggtaacatgatgagaaaattcgggttatctattgatgatattgtcgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactat 107  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38129478 ggtatggtaacatgatgagaaaattcgggttatctattgataatattgttgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactat 38129577  T
Q  108 ggggaaagatcttttttgggctattagaggaggtggaggagcaagttttggagttatcttatcgtacacggttaaacttgtttcggtaccagaaaaggtt 207  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38129578 gggggaagatcttttttgggctattagaggaggtggaggagcaagttttggagttatcttatcgtacacggttaaacttgtttcggtaccagaaaaggtt 38129677  T
Q  208 acagtttttcaagtaggcaagagtttggagcagaatgctaccgacattgttttccagtg 266  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38129678 acagtttttcaagtagacaagagtttggagcagaatgctaccgacattgttttccagtg 38129736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 38125525 - 38125692
Alignment:
Q  8 ggtatggtaacatgatgagaaaattcgggttatctattgatgatattgtcgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactat 107  Q
    ||||||||||||||||||||||||| ||||| ||||||||| || |||| |||||| ||||| ||||||| |||||||| |||||||| | |||| | ||    
T  38125525 ggtatggtaacatgatgagaaaatttgggttgtctattgataatgttgttgatgctgaaattgttgatgttaatggtaggattcttgataggaaatcaat 38125624  T
Q  108 ggggaaagatcttttttgggctattagaggaggtggaggagcaagttttggagttatcttatcgtaca 175  Q
    |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  38125625 gggtgaagaacttttttgggctattagaggaggtggaggagcaagttttggagttattttatcataca 38125692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 38090691 - 38090847
Alignment:
Q  8 ggtatggtaacatgatgagaaaattcgggttatctattgatgatattgtcgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactat 107  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||| | |||||||| ||| |||||||  |||| ||| | ||||| | | || | ||    
T  38090691 ggtatggtaacatgatgagaaaatttgggttatctgttgataatattttggatgctaagattgttgatgttgatggaagagtgcttgatagggaatcaat 38090790  T
Q  108 ggggaaagatcttttttgggctattagaggaggtggaggagcaagttttggagttat 164  Q
    |||| ||||| ||||||||||||||||||| ||||| ||||| |||||||| |||||    
T  38090791 gggggaagatgttttttgggctattagaggtggtggtggagctagttttggtgttat 38090847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 37954181 - 37954276
Alignment:
Q  70 attgatgtcaatggtagaattcttgacaagaaaactatggggaaagatcttttttgggctattagaggaggtggaggagcaagttttggagttatc 165  Q
    |||||||| ||||||||  |||||||||   || | |||||  | ||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  37954181 attgatgtgaatggtagggttcttgacagagaatcgatgggtgaggatctgttttgggctattagaggaggtggaggagcaagctttggagttatc 37954276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 38061886 - 38061844
Alignment:
Q  119 ttttttgggctattagaggaggtggaggagcaagttttggagt 161  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38061886 ttttttgggctattagaggaggtggaggagcaagttttggagt 38061844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 38081982 - 38082023
Alignment:
Q  120 tttttgggctattagaggaggtggaggagcaagttttggagt 161  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  38081982 tttttgggctattagaggtggtggaggagcaagttttggagt 38082023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 36107947 - 36108103
Alignment:
Q  8 ggtatggtaacatgatgagaaaattcgggttatctattgatgatattgtcgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactat 107  Q
    ||||||||||  ||||||||||||| ||  | ||| ||||| ||||| | ||||| |||||  ||||||| || ||||  |||||||| |  ||| | ||    
T  36107947 ggtatggtaatttgatgagaaaatttggtctttctgttgataatattattgatgcaaaaatggttgatgttaagggtaatattcttgatagaaaatcaat 36108046  T
Q  108 ggggaaagatcttttttgggctattagaggaggtggaggagcaagttttggagttat 164  Q
    |||  ||||||||||||||||||| ||||| ||||| || || |||||||| |||||    
T  36108047 gggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttat 36108103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 38058570 - 38058610
Alignment:
Q  121 ttttgggctattagaggaggtggaggagcaagttttggagt 161  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  38058570 ttttgggctattagaggtggtggaggagcaagttttggagt 38058610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 38072898 - 38072935
Alignment:
Q  121 ttttgggctattagaggaggtggaggagcaagttttgg 158  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  38072898 ttttgggctattagaggtggtggaggagcaagttttgg 38072935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 38086408 - 38086445
Alignment:
Q  121 ttttgggctattagaggaggtggaggagcaagttttgg 158  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  38086408 ttttgggctattagaggtggtggaggagcaagttttgg 38086445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 34971686 - 34971542
Alignment:
Q  20 tgatgagaaaattcgggttatctattgatgatattgtcgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactatggggaaagatct 119  Q
    ||||||||||||| ||  | ||||||||| ||||  | || || |||||| |||||||||||||||  |||||||| |  ||  | |||||  |||||||    
T  34971686 tgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgggagaagatct 34971587  T
Q  120 tttttgggctattagaggaggtggaggagcaagttttggagttat 164  Q
     ||||||||||| ||||| ||||| || || |||||||| |||||    
T  34971586 cttttgggctatcagaggtggtggtggtgctagttttggtgttat 34971542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 36100688 - 36100844
Alignment:
Q  8 ggtatggtaacatgatgagaaaattcgggttatctattgatgatattgtcgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactat 107  Q
    ||||||||||  ||||||||||||| ||  | ||||||||| ||||  | ||||| |||||| |||||||||||||||  || ||||| |  ||  | ||    
T  36100688 ggtatggtaatttgatgagaaaatttggtctttctattgataatatcattgatgcaaaaattgttgatgtcaatggtaatatccttgatagaaagtcaat 36100787  T
Q  108 ggggaaagatcttttttgggctattagaggaggtggaggagcaagttttggagttat 164  Q
    |||  ||||||| ||||||||||| || || ||||| || || |||||||| |||||    
T  36100788 gggagaagatctattttgggctataaggggtggtggtggtgctagttttggtgttat 36100844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 164
Target Start/End: Original strand, 21482681 - 21482835
Alignment:
Q  10 tatggtaacatgatgagaaaattcgggttatctattgatgatattgtcgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactatgg 109  Q
    ||||| || |||||||||||||| ||  | ||| ||||| ||||| | || || |||||| ||||||| |||||||  || ||||| |  ||| | ||||    
T  21482681 tatggaaatatgatgagaaaatttggtctttctgttgataatattattgacgcaaaaattgttgatgtgaatggtaatatccttgatagaaaatcaatgg 21482780  T
Q  110 ggaaagatcttttttgggctattagaggaggtggaggagcaagttttggagttat 164  Q
    |  ||||||||||||||||||| ||||| ||||| || || |||| ||| |||||    
T  21482781 gagaagatcttttttgggctataagaggtggtggtggtgctagttatggtgttat 21482835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 36080097 - 36080233
Alignment:
Q  22 atgagaaaattcgggttatctattgatgatattgtcgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactatggggaaagatcttt 121  Q
    ||||||||||| ||  ||||| ||||| ||||  | || || |||||| ||||||| |||||||| |||||||| |  ||| | |||||  ||||| | |    
T  36080097 atgagaaaatttggtctatctgttgataatataattgacgcaaaaattgttgatgttaatggtagtattcttgatagaaaatcaatgggagaagatttat 36080196  T
Q  122 tttgggctattagaggaggtggaggagcaagttttgg 158  Q
    |||||||||| || || ||||| || |||||||||||    
T  36080197 tttgggctataaggggtggtggtggtgcaagttttgg 36080233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 36090284 - 36090232
Alignment:
Q  112 aaagatcttttttgggctattagaggaggtggaggagcaagttttggagttat 164  Q
    |||||||||||||||||||| ||||| ||||| || || |||||||| |||||    
T  36090284 aaagatcttttttgggctataagaggtggtggtggggctagttttggtgttat 36090232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 48875700 - 48875827
Alignment:
Q  139 ggtggaggagcaagttttggagttatcttatcgtacacggttaaacttgtttcggtaccagaaaaggttacagtttttcaagtaggcaagagtttggagc 238  Q
    ||||||||||||||||||||||| || ||||| | ||  |||||||||||||| |||| |||||||||||||||||||||||| | ||||||||||||||    
T  48875700 ggtggaggagcaagttttggagtcattttatcatccattgttaaacttgtttcagtacgagaaaaggttacagtttttcaagttgacaagagtttggagc 48875799  T
Q  239 agaatgctaccgacattgttttccagtg 266  Q
    | |||||||| || | ||||||||||||    
T  48875800 aaaatgctactgatactgttttccagtg 48875827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 48875645 - 48875693
Alignment:
Q  53 ttgtcgatgctaaaattattgatgtcaatggtagaattcttgacaagaa 101  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||    
T  48875645 ttgttgatgctaaaattgttgatgtcaatggtaggattcttgacaagaa 48875693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 2895533 - 2895427
Alignment:
Q  154 tttggagttatcttatcgtacacggttaaacttgtttcggtaccagaaaaggttacagtttttcaagtaggcaagagtttggagcagaatgctaccgaca 253  Q
    |||||||| || ||||| ||||| | ||||||||||||||| | | |||| || ||||||||| |||| | ||||||||| |||||||||||||| || |    
T  2895533 tttggagtcattttatcatacactgctaaacttgtttcggtgcgaaaaaacgtgacagttttttaagttgacaagagtttagagcagaatgctactgata 2895434  T
Q  254 ttgtttt 260  Q
    |||||||    
T  2895433 ttgtttt 2895427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 34268749 - 34268711
Alignment:
Q  121 ttttgggctattagaggaggtggaggagcaagttttgga 159  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  34268749 ttttgagctattagaggaggtggaggagcaagttttgga 34268711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 11933740 - 11933888
Alignment:
Q  10 tatggtaacatgatgagaaaattcgggttatctattgatgatattgtcgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactatgg 109  Q
    ||||||||||||||||||||||  ||  | ||  ||||| ||||| |||||||  |||| || ||||| ||||||||| | ||||| |  ||| | ||||    
T  11933740 tatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatagaaaatcaatgg 11933839  T
Q  110 ggaaagatcttttttgggctattagaggaggtggaggagcaagttttgg 158  Q
    |  ||||||||||||||||||||| ||| ||||| ||||| || |||||    
T  11933840 gagaagatcttttttgggctattaaaggtggtggtggagctagctttgg 11933888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 11946961 - 11947109
Alignment:
Q  10 tatggtaacatgatgagaaaattcgggttatctattgatgatattgtcgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactatgg 109  Q
    ||||||||||||||||||||||  ||  | ||  ||||| ||||| |||||||  |||| || ||||| ||||||||| | ||||| |  ||| | ||||    
T  11946961 tatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatagaaaatcaatgg 11947060  T
Q  110 ggaaagatcttttttgggctattagaggaggtggaggagcaagttttgg 158  Q
    |  ||||||||||||||||||||| ||| ||||| ||||| || |||||    
T  11947061 gagaagatcttttttgggctattaaaggtggtggtggagctagctttgg 11947109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 8338628 - 8338728
Alignment:
Q  64 aaaattattgatgtcaatggtagaattcttgacaagaaaactatggggaaagatcttttttgggctattagaggaggtggaggagcaagttttggagtta 163  Q
    ||||||||||||||||||||||  | |||||| |  ||| | |||||  ||||||| |||||||||||||| || ||||| || || |||||||| ||||    
T  8338628 aaaattattgatgtcaatggtaatactcttgatagaaaatcaatgggagaagatctgttttgggctattaggggtggtggtggtgctagttttggtgtta 8338727  T
Q  164 t 164  Q
    |    
T  8338728 t 8338728  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 11811353 - 11811313
Alignment:
Q  121 ttttgggctattagaggaggtggaggagcaagttttggagt 161  Q
    ||||||||||| ||||||||||||||| |||| ||||||||    
T  11811353 ttttgggctataagaggaggtggaggatcaagctttggagt 11811313  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 10792886 - 10792924
Alignment:
Q  121 ttttgggctattagaggaggtggaggagcaagttttgga 159  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  10792886 ttttgagctattagaggaggtggaggagcaagttttgga 10792924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 6838720 - 6838864
Alignment:
Q  20 tgatgagaaaattcgggttatctattgatgatattgtcgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactatggggaaagatct 119  Q
    ||||||||||||| ||  | ||||||||| ||||| | || || |||||| ||||||| || ||||  |||||||| |  ||| | |||||  |||||||    
T  6838720 tgatgagaaaatttggtctttctattgataatattattgacgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatct 6838819  T
Q  120 tttttgggctattagaggaggtggaggagcaagttttggagttat 164  Q
    ||||||||| || ||||| ||||| || || |||||||| |||||    
T  6838820 tttttgggccataagaggtggtggtggtgctagttttggtgttat 6838864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 7001540 - 7001500
Alignment:
Q  121 ttttgggctattagaggaggtggaggagcaagttttggagt 161  Q
    ||||| ||||||||||| | |||||||||||||||||||||    
T  7001540 ttttgagctattagaggtgctggaggagcaagttttggagt 7001500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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