View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5418-Insertion-2 (Length: 1135)
Name: NF5418-Insertion-2
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418-Insertion-2 |
 | |
|
| [»] scaffold0189 (2 HSPs) |
| | |
|
| [»] scaffold0246 (1 HSPs) |
| | |
|
| [»] scaffold0480 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0189 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 318 - 1059
Target Start/End: Complemental strand, 6318 - 5566
Alignment:
| Q |
318 |
aatggtgttgtacagttgaatgtttctgacaggtggctatgggagccagacaaacatgatggttacacagtaagagacgcctatcatgctctaacataca |
417 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6318 |
aatgttgttgtacagttgaatgtttttgacaggtggctatgggagccagacaaacatgccggttacatagtaagagacgcctatcatgctctaacataca |
6219 |
T |
|
| Q |
418 |
tgacaacccctactctagacgagacagcaaaccttgtatggcatcaacatgttcccttgaaagtttcctttgttgcatggcggttgctgaaagataggtt |
517 |
Q |
| |
|
|| | |||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||| ||||||||||||||||| | ||| |
|
|
| T |
6218 |
tggaagcccctaatctagacgagacagcaaaccttgtatggcatcagcaggttcccttgaaagtttccattgttgcgtggcggttgctgaaagacaagtt |
6119 |
T |
|
| Q |
518 |
accaactaaaatcaatctccaaaggcgcggtattactcaggtcacaaacacgttatgtgtttcggggtgcggtatagaggagtcggcctctcacttgttc |
617 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6118 |
acccactaaaaccaatctccaaaggcgcggtattactcaggtcacagacacgttatgcgtttcagggtgcggtatagaggagtcggcctctcacttgttc |
6019 |
T |
|
| Q |
618 |
ttacattatcatgtttttggttatctttggaagcttatcggatcttggattggagtgtctggtgttgatacagacaatgtcagtgagcacttccaccaat |
717 |
Q |
| |
|
||||||| |||||||||||||| ||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6018 |
ttacattgtcatgtttttggttctctctggcagcttatctgatcttggattggagtgactggtgttgatacagacaatgtcagtgagcacttccaccaat |
5919 |
T |
|
| Q |
718 |
ttattcattattcaggttatacaaaggctcgtcgctcttttcttcaattattatggcttttgtgtgtttggttgctgtggaatgaacgaaacaatagact |
817 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
5918 |
ttattcattattcaggttatacaaaggctcgtcactcttttcttcaattattatggcttttgtgtgtttggttgttgtggaatgaatgaaacaacagact |
5819 |
T |
|
| Q |
818 |
gttcaaaaacacatcaacacctattgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaag-caacaaaaccacttttgtgtacggt |
916 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||| || |||||||| ||||||||||||| |
|
|
| T |
5818 |
gttcaaaaacactgcaacacctattgagcagctattagataaagtaaaatttcatccggtgcggtggcttgaagccatcaaaaccatttttgtgtacggt |
5719 |
T |
|
| Q |
917 |
tctcaaagttggtggtcgagccctttata-tgttt-ggcatcgactgacttattcttgtaattatactttgtgggagtttgtttg-cgagt--ggacatt |
1011 |
Q |
| |
|
|||||||||||||| |||| |||| |||| ||||| || |||||||||||||||||||||||||||||||||| |||||||||| || || | ||||| |
|
|
| T |
5718 |
tctcaaagttggtgatcgaaccctatatattgtttcggtatcgactgacttattcttgtaattatactttgtgacagtttgtttgccgggttggaacatt |
5619 |
T |
|
| Q |
1012 |
tagtaca-cttgtactgaggtgtt--catcg-cgtag-taatatatttcattt |
1059 |
Q |
| |
|
||||||| |||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
5618 |
tagtacaccttgtactgaggtgtttacatcgccgtagttaatatatttcattt |
5566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 8435 - 8119
Alignment:
| Q |
7 |
aacatgttctttatattcatggcagatttactcgcaccaatgaggagttatacttgtttaatatctatgccccatgtgaatctcctgcaaatcaagaatt |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8435 |
aacatattctttatattcatggcagatttactcgcaccaatgaggagttctatttgtttaatatctatgccccatgtgaatctcgtgcaaatcaagaatt |
8336 |
T |
|
| Q |
107 |
atgggattctttgtcagctagattgcatttgttaagtggtgcgaaggtgtgtttgtgtggagattttaatgcgatttgaaatgcgaaggaaagatggtct |
206 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
8335 |
atgagattctttgtcagctagattgcagttgttaagtggtgcgaaggtgtgtttgtgtggagattttaatgcggttcgaaatgcggaggaaagatggtct |
8236 |
T |
|
| Q |
207 |
caaaggggaaatagcgccacctatgattatcaccaattcagccattttattgatgacaatgggttgatagatttaccgttgtgtggtcgtcgatacacgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
8235 |
caaaggggaaatagcgccacctatgattatcatcacttcagccattttattgatgacaatgggttgatatatttaccgttgtatggtcgtcgatacacgt |
8136 |
T |
|
| Q |
307 |
ggttcaaaggaaatggt |
323 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
8135 |
ggttcaaacgaaatggt |
8119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 319; Significance: 1e-179; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 327 - 1000
Target Start/End: Complemental strand, 7936169 - 7935487
Alignment:
| Q |
327 |
gtacagttgaatgtttctgacaggtggctatgggagccagacaaacatgatggttacacagtaagagacgcctatcatgctctaacatacatgacaaccc |
426 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||| || ||||||| ||| |||||||| ||||||||||||||||| || |||||||| || ||| |
|
|
| T |
7936169 |
gtacagttaaatgtttcagacaggtggcaatgggagctggaaaaacatgctggatacacagtcagagacgcctatcatgcactggcatacatggcagccc |
7936070 |
T |
|
| Q |
427 |
ctactctagacgagacagcaaaccttgtatggcatcaacatgttcccttgaaagtttcctttgttgcatggcggttgctgaaagataggttaccaactaa |
526 |
Q |
| |
|
| ||||| ||| ||||||| |||||||| |||||||| || |||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
7936069 |
ccactcttgacaagacagcgaaccttgtctggcatcagcaggttcccttgaaagtttccattgttgcgtggcggttgctaaaagacaggttaccaactaa |
7935970 |
T |
|
| Q |
527 |
aatcaatctccaaaggcgcggtattactcaggtcacaaacacgttatgtgtttcggggtgcgg---tatagaggagtcggcctctcacttgttcttacat |
623 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||| |||||||| || || |||||||||||||| ||||||||||||||| || || |||||||||||| |
|
|
| T |
7935969 |
aatcaacctccaaaggcgcgacattgctcaggtaacaaacactttgtgcgtttcggggtgcggcggtatagaggagtcggcatcacatttgttcttacat |
7935870 |
T |
|
| Q |
624 |
tatcatgtttttggttatctttggaagcttatcggatcttggattggagtgtctggtgttgatacagacaatgtcagtgagcacttccaccaatttattc |
723 |
Q |
| |
|
| || ||||||||||| ||| ||| |||||||| ||||||||||||| ||| |||||||||||| ||||||||||||| || || |||||||||||| |
|
|
| T |
7935869 |
tgtcctgtttttggttctctctggcagcttatcagatcttggattggcgtgattggtgttgatactgacaatgtcagtgcccatttttaccaatttattc |
7935770 |
T |
|
| Q |
724 |
attattcaggttatacaaaggc---tcgtcgctcttttcttcaattattatggcttttgtgtgtttggttgctgtggaatgaacgaaacaatagactgtt |
820 |
Q |
| |
|
|||||||||||||||||||||| ||| || || ||| | | |||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
7935769 |
attattcaggttatacaaaggcggctcgacgttcatttttactattattatggcttttgtgcgtttggttgctgtggaatgaacgaaacaacaggctgtt |
7935670 |
T |
|
| Q |
821 |
caaaaacacatcaacacctattgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaag-caacaaaaccacttttgtgtacggttct |
919 |
Q |
| |
|
||||||||| |||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7935669 |
caaaaacactgaaacacctattgaacagctgttagataaagtaaaatttcattctttgtggtggcttaaagccaacaaaaccacttttgtgtacggttct |
7935570 |
T |
|
| Q |
920 |
caaagttggtggtcgagccctttata-tgt-ttggcatcgactgacttattcttgtaattatactttgtgggagtttgtttgc |
1000 |
Q |
| |
|
|||||||||| ||||| |||||| || ||| | || |||||||||||| | |||||||||||||||||| | ||||||||| |
|
|
| T |
7935569 |
caaagttggtagtcgaaccctttttattgtctgggtatcgactgacttttatttgtaattatactttgtgacaatttgtttgc |
7935487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 658 - 940
Target Start/End: Complemental strand, 21400274 - 21399990
Alignment:
| Q |
658 |
gatcttggattggagtgtctggtgtt-gatacagacaatgtcagtgagcacttccaccaatttattcattattcaggttatacaaaggctcgtcgctctt |
756 |
Q |
| |
|
||||||||||||||||||| ||||| || | ||||||||| ||| || || | |||||||| ||||||||||||||| ||||||||||||| || | |
|
|
| T |
21400274 |
gatcttggattggagtgtcgggtgtcagacgctgacaatgtccatgatcatttttatcaatttatccattattcaggttattcaaaggctcgtcgatcat |
21400175 |
T |
|
| Q |
757 |
ttcttcaattattatggcttttgtgtgtttggttgctgtggaatgaacgaaacaatagactgttcaaaaacacatcaacacctattgagcagctattaga |
856 |
Q |
| |
|
|| | ||||||||||||||| | ||||| ||| || | ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21400174 |
ttttacaattattatggcttctttgtgtgtggatgatatggaacgaacgaaacaacagactattcaaaaacactgaaacacctattgagcagctattaga |
21400075 |
T |
|
| Q |
857 |
taaagtaaaatttcatacgttgtggtggcttaaag-caacaaaaccacttttgtgtacggttctcaaagttggtggtcgagccct |
940 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21400074 |
taaagttaaatttcattcgttgtggtggcttaaagccaataataccacttttgtgtacggttctcaaagttggtggtcgaaccct |
21399990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 737 - 940
Target Start/End: Complemental strand, 47748974 - 47748770
Alignment:
| Q |
737 |
tacaaaggctcgtcgctcttttcttcaattattatggcttttgtgtgtttggttgctgtggaatgaacgaaacaatagactgttcaaaaacacatcaaca |
836 |
Q |
| |
|
||||||| ||||||| || ||| | ||||| ||||||||| | ||||| ||| || ||||||| |||||||| || ||| ||||||||||||| |||| |
|
|
| T |
47748974 |
tacaaagactcgtcgatcatttttacaattgttatggcttctttgtgtgtggatggtgtggaacgaacgaaataacagattgttcaaaaacactgaaaca |
47748875 |
T |
|
| Q |
837 |
cctattgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaag-caacaaaaccacttttgtgtacggttctcaaagttggtggtcga |
935 |
Q |
| |
|
|||||||| || |||||| ||||||| ||||||||| |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47748874 |
cctattgaacaactattaaataaagttaaatttcattcgttgtggtggcttaaagccaataataccacttttgtgtacggttctcaaagttggtggtcga |
47748775 |
T |
|
| Q |
936 |
gccct |
940 |
Q |
| |
|
|||| |
|
|
| T |
47748774 |
accct |
47748770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 841 - 998
Target Start/End: Original strand, 13700559 - 13700719
Alignment:
| Q |
841 |
ttgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaagc-aacaaaaccacttttgtgtacggttctcaaagttggtggtcgagccc |
939 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
13700559 |
ttgagcagctgttagataaagtaaaatttcatttcttgtggtggcttaaagttaacaaaatcacttttgtgtacgtttctcaaagttggtggtcgaaccc |
13700658 |
T |
|
| Q |
940 |
tttata-tgttt-ggcatcgactgacttattcttgtaattatactttgtgggagtttgttt |
998 |
Q |
| |
|
|||||| ||||| || |||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
13700659 |
tttatattgtttgggtatcgactgactttctcttgtaattatactttgtgacagtttgttt |
13700719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 741 - 944
Target Start/End: Complemental strand, 14307079 - 14306875
Alignment:
| Q |
741 |
aaggctcgtcgctcttttcttcaattattatggcttttgtgtgtttggttgctgtggaatgaacgaaacaatagactgttcaaaaacacatcaacaccta |
840 |
Q |
| |
|
||||||||||| || ||| | ||| || |||||||| | |||||||||||| | ||||||||||| ||||| || ||||||| |||| | ||| || | |
|
|
| T |
14307079 |
aaggctcgtcggtcatttttacaactaatatggcttatttgtgtttggttgatttggaatgaacgtaacaacaggttgttcaataacatagtaactccga |
14306980 |
T |
|
| Q |
841 |
ttgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaagc-aacaaaaccacttttgtgtacggttctcaaagttggtggtcgagccc |
939 |
Q |
| |
|
|| ||||||||||| |||| ||||| |||| ||| |||||| | ||||| || || | || |||||||||||||||||| || |||||||||| ||| |
|
|
| T |
14306979 |
ttatacagctattagaaaaagcaaaatatcatttgttttggtggttaaaagctaataacatcaattttgtgtacggttctcagagatggtggtcgaaccc |
14306880 |
T |
|
| Q |
940 |
tttat |
944 |
Q |
| |
|
||||| |
|
|
| T |
14306879 |
tttat |
14306875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 840 - 944
Target Start/End: Complemental strand, 34829127 - 34829022
Alignment:
| Q |
840 |
attgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaagc-aacaaaaccacttttgtgtacggttctcaaagttggtggtcgagcc |
938 |
Q |
| |
|
||||| || ||| |||| ||||| |||||||| | || |||||||||||||| || || |||||||| |||||| ||||||||| |||||||||| || |
|
|
| T |
34829127 |
attgaacaactagtagaaaaagttaaatttcactccttttggtggcttaaagctaataaggccacttttatgtacgattctcaaagatggtggtcgaacc |
34829028 |
T |
|
| Q |
939 |
ctttat |
944 |
Q |
| |
|
|||||| |
|
|
| T |
34829027 |
ctttat |
34829022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 846 - 892
Target Start/End: Original strand, 31770105 - 31770151
Alignment:
| Q |
846 |
cagctattagataaagtaaaatttcatacgttgtggtggcttaaagc |
892 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||||||||| ||||| |
|
|
| T |
31770105 |
cagcttttagataaagtaaaatttcattctttgtggtggctaaaagc |
31770151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 714 - 747
Target Start/End: Complemental strand, 15279399 - 15279366
Alignment:
| Q |
714 |
caatttattcattattcaggttatacaaaggctc |
747 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
15279399 |
caatttattcattattcaggttattcaaaggctc |
15279366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 46248927 - 46249012
Alignment:
| Q |
465 |
catgttcccttgaaagtttcctttgttgcatggcggttgctgaaagataggttaccaactaaaatcaatctccaaaggcgcggtat |
550 |
Q |
| |
|
|||||||| ||||| |||||| | |||| ||||| || ||||||| |||||||||||| || |||||| |||||||||||||| |
|
|
| T |
46248927 |
catgttccattgaaggtttccatccttgcctggcgtttaatgaaagacaggttaccaactcgaagcaatcttcaaaggcgcggtat |
46249012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 450 - 889
Target Start/End: Original strand, 38927203 - 38927642
Alignment:
| Q |
450 |
cttgtatggcatcaacatgttcccttgaaagtttcctttgttgcatggcggttgctgaaagataggttaccaactaaaatcaatctccaaaggcgcggta |
549 |
Q |
| |
|
||||| |||||||| || || |||||||||||||| ||||||| |||||||||||||||||||||||| |||| |||| ||||||||||||| |||||| |
|
|
| T |
38927203 |
cttgtttggcatcagcagatttccttgaaagtttccattgttgcgtggcggttgctgaaagataggttatcaacaaaaaccaatctccaaaggtgcggta |
38927302 |
T |
|
| Q |
550 |
ttactcaggtcacaaacacgttatgtgtttcggggtgcggtatagaggagtcggcctctcacttgttcttacattatcatgtttttggttatctttggaa |
649 |
Q |
| |
|
|| | |||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| ||| || ||||||| ||| || | |
|
|
| T |
38927303 |
tttcgcaggtcacaaacacattatgcgtgtcggggtgtggtatagaggagtcggcttctcacttgttcttacattgtcacgtatttggttctctctgtca |
38927402 |
T |
|
| Q |
650 |
gcttatcggatcttggattggagtgtctggtgttgatacagacaatgtcagtgagcacttccaccaatttattcattattcaggttatacaaaggctcgt |
749 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
38927403 |
acttatcagatcttggattggagtgattggtgttgatacagataatgtcagtgagcacttctaccaattcattcattattcaggttatacaaaggcttgc |
38927502 |
T |
|
| Q |
750 |
cgctcttttcttcaattattatggcttttgtgtgtttggttgctgtggaatgaacgaaacaatagactgttcaaaaacacatcaacacctattgagcagc |
849 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
38927503 |
cgctcttttcttcaattattatggttgttgtgtgtttggttgctgtggaatgaacaaaacaacagattgttcaaaaacactgcaacacctattgagcagt |
38927602 |
T |
|
| Q |
850 |
tattagataaagtaaaatttcatacgttgtggtggcttaa |
889 |
Q |
| |
|
| ||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
38927603 |
tgttagataaagttaaatttcattcgttgtggtggcttaa |
38927642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 590 - 998
Target Start/End: Original strand, 1159129 - 1159540
Alignment:
| Q |
590 |
tatagaggagtcggcctctcacttgttcttacattatcatgtttttggttatctttggaagcttatcggatcttggattggagtgtctggtgttgataca |
689 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| |||||||||||||| ||| ||| | |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
1159129 |
tatagaggagtcgacttctcacttgttcttacattgtcatgtttttggttctctatggcaacttatcagatcttggattggagtgactggtgttgataca |
1159228 |
T |
|
| Q |
690 |
gacaatgtcagtgagcacttccaccaatttattcattattcaggttatacaaaggctcgtcgctcttttcttcaattattatggcttttgtgtgtttggt |
789 |
Q |
| |
|
| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
1159229 |
tataatgtcagtgagcacttctaccaattcattcattattcaggttatacaaaggcgtgtcgctcttttcttcaattattatggttgttgtgtgtttggt |
1159328 |
T |
|
| Q |
790 |
tgctgtggaatgaacgaaacaatagactgttcaaaaacacatcaacacctattgagcagctattagataaagtaaaatttcatacgttgtggtggcttaa |
889 |
Q |
| |
|
|| |||| |||||||||||||| | | ||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
1159329 |
tgttgtgaaatgaacgaaacaacaaattgttcaaaaacactgcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaa |
1159428 |
T |
|
| Q |
890 |
agc-aacaaaaccacttttgtgtacggttctcaaagttggtggtcgagccctttata-tgttt-ggcatcgactgacttattcttgtaattatactttgt |
986 |
Q |
| |
|
||| || |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| || || ||| ||||| ||||| |||||||||||||| |
|
|
| T |
1159429 |
agctaaaaaaaccacttttgtgtacggttctcaaaattggtggtcgaaccctttatattgtttgggtattgaccgactttttcttataattatactttgt |
1159528 |
T |
|
| Q |
987 |
gggagtttgttt |
998 |
Q |
| |
|
| ||||||||| |
|
|
| T |
1159529 |
gacagtttgttt |
1159540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 846 - 943
Target Start/End: Complemental strand, 6823116 - 6823018
Alignment:
| Q |
846 |
cagctattagataaagtaaaatttcatacgttgtggtggcttaaagc-aacaaaaccacttttgtgtacggttctcaaagttggtggtcgagcccttta |
943 |
Q |
| |
|
||||| ||||| |||| ||||| |||| |||| |||||| | ||||| || || |||| ||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
6823116 |
cagctgttagaaaaagcaaaatatcattcgttatggtggttaaaagctaataacaccaattttgtgtacggttctcaaagatggtggtcgaacccttta |
6823018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 854 - 944
Target Start/End: Complemental strand, 11196045 - 11195954
Alignment:
| Q |
854 |
agataaagtaaaatttcatacgttgtggtggcttaaagc-aacaaaaccacttttgtgtacggttctcaaagttggtggtcgagccctttat |
944 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||||| |||||| || |||| ||| |||| ||||||| ||||||||| |||||||| |
|
|
| T |
11196045 |
agataaagtaaaatttcactctttatggtggcttaaagctaacaaagtcaattttatgttcggtactcaaagatggtggtcggaccctttat |
11195954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 837 - 934
Target Start/End: Original strand, 44941243 - 44941341
Alignment:
| Q |
837 |
cctattgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaagc-aacaaaaccacttttgtgtacggttctcaaagttggtggtcg |
934 |
Q |
| |
|
||||||| ||||| | |||||||||||| |||||| |||| |||||||| ||||| ||||| ||| |||||||||||||| || || ||||||||| |
|
|
| T |
44941243 |
cctattgttcagctctcagataaagtaaagtttcattcgttttggtggctaaaagctaacaatgtcacatttgtgtacggttcacagagatggtggtcg |
44941341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 539 - 987
Target Start/End: Complemental strand, 52814496 - 52814045
Alignment:
| Q |
539 |
aaggcgcggtattactcaggtcacaaacacgttatgtgtttcggggtgcggtatagaggagtcggcctctcacttgttcttacattatcatgtttttggt |
638 |
Q |
| |
|
|||||| |||||| | |||||||||||||| ||||| || |||||||| ||| ||||||||||||| ||||||||||||||||||| |||||| |||||| |
|
|
| T |
52814496 |
aaggcgtggtatttcgcaggtcacaaacacattatgcgtgtcggggtgtggtctagaggagtcggcttctcacttgttcttacattgtcatgtatttggt |
52814397 |
T |
|
| Q |
639 |
tatctttggaagcttatcggatcttggattggagtgtctggtgttgatacagacaatgtcagtgagcacttccaccaatttattcattattcaggttata |
738 |
Q |
| |
|
| ||| ||| | |||||| ||||||||||||||||| |||||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
52814396 |
tctctatggcaacttatcagatcttggattggagtgactggtgttgatacagataatgtcagtgagcatttctaccaattcattcattattcaggttata |
52814297 |
T |
|
| Q |
739 |
caaaggctcgtcgctcttttcttcaattattatggcttttgtgtgtttggttgctgtggaatgaacgaaacaatagactgttcaaaaacacatcaacacc |
838 |
Q |
| |
|
||||||| | |||||||||||||| ||||||||| | ||||||||||||||| ||||||||||| ||||||| ||| ||||||| |||| | ||||||| |
|
|
| T |
52814296 |
caaaggcgtgccgctcttttcttcagttattatggttgttgtgtgtttggttgttgtggaatgaaagaaacaacagattgttcaacaacatagcaacacc |
52814197 |
T |
|
| Q |
839 |
tattgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaag-caacaaaaccacttttgtgtacggttctcaaagttggtggtcgagc |
937 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52814196 |
tattgagcagttattcgataaagtaaaatttcattcgttgtggtggcttaaagccaacaaaatcacttttgtgtacggttctcaaagttggtggtcgaac |
52814097 |
T |
|
| Q |
938 |
cctttata-tgttt-ggcatcgactgacttattcttgtaattatactttgtg |
987 |
Q |
| |
|
|||||||| ||||| || || ||||||||| | ||||||||||||||||||| |
|
|
| T |
52814096 |
cctttatattgtttgggtattgactgacttttccttgtaattatactttgtg |
52814045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 612 - 987
Target Start/End: Original strand, 41879244 - 41879623
Alignment:
| Q |
612 |
ttgttcttacattatcatgtttttggttatctttggaagcttatcggatcttggattggagtgtctggtgttgatacagacaatgtcagtgagcacttcc |
711 |
Q |
| |
|
|||||| | |||| |||||||||||| | |||||| | | |||| | |||||||||| ||||||| || ||||| || ||| | ||||| || || | |
|
|
| T |
41879244 |
ttgttccttcattgtcatgtttttggatcgctttggtatcatatctggtcttggattgacatgtctggagtagatactgaaaatattagtgaacaatttc |
41879343 |
T |
|
| Q |
712 |
accaatttattcattattcaggttatacaaaggctcgtcgctcttttcttcaattattatggcttttgtgtgtttggttgctgtggaatgaacgaaacaa |
811 |
Q |
| |
|
| ||||||||||||||| ||||| | ||||| ||||||| || || | ||| ||||||| ||| | || | ||| || ||||||||||||||||||| |
|
|
| T |
41879344 |
aacaatttattcattatacaggtcactcaaagactcgtcgttcgttcttacaactattatgacttctttgcatctggctggtgtggaatgaacgaaacaa |
41879443 |
T |
|
| Q |
812 |
tagactgttcaaaaacacatcaacacctattgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaagc-aacaaaaccacttttgtg |
910 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||| || ||||||||||| |||||||| |||||||||| | ||||| || |||||||||||| || |
|
|
| T |
41879444 |
cagactgttcaataacactgaaacatctattgagcaactcttagataaagttaaatttcactcgttgtggtgattaaaagctaataaaaccacttttatg |
41879543 |
T |
|
| Q |
911 |
tacggttctcaaagttggtggtcgagcccttta-tatgt-ttggcatcgactgacttat-tcttgtaattatactttgtg |
987 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| | ||| | || |||||||||||| | |||||||| ||||||||||| |
|
|
| T |
41879544 |
tacggttctcaaaactggtggtcgaaccctttactttgtctaggtatcgactgacttttctcttgtaaatatactttgtg |
41879623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 661 - 791
Target Start/End: Complemental strand, 40484050 - 40483920
Alignment:
| Q |
661 |
cttggattggagtgtctggtgttgatacagacaatgtcagtgagcacttccaccaatttattcattattcaggttatacaaaggctcgtcgctcttttct |
760 |
Q |
| |
|
|||||||||| ||||||||||| ||| | |||| | ||||| || |||| |||||||| |||||| |||| || ||||| |||| ||||||||||| |
|
|
| T |
40484050 |
cttggattggcgtgtctggtgtagatcctctcaatattagtgatcatttccttcaatttatgcattataaaggtcattcaaagtctcgacgctcttttct |
40483951 |
T |
|
| Q |
761 |
tcaattattatggcttttgtgtgtttggttg |
791 |
Q |
| |
|
|||||| | |||||| |||||||||||||| |
|
|
| T |
40483950 |
ccaattactttggcttctgtgtgtttggttg |
40483920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 3e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 318 - 933
Target Start/End: Original strand, 40563468 - 40564083
Alignment:
| Q |
318 |
aatggtgttgtacagttgaatgtttctgacaggtggctatgggagccagacaaacatgatggttacacagtaagagacgcctatcatgctctaacataca |
417 |
Q |
| |
|
|||| |||||| |||| ||||||||||| ||||||| |||||||| |||||| |||| || | |||||| || || || |||||||||||||||| || |
|
|
| T |
40563468 |
aatgttgttgtgcagtctaatgtttctgataggtggcaatgggagctagacaagcatgccggat-cacagtcagggatgcttatcatgctctaacatcca |
40563566 |
T |
|
| Q |
418 |
tgacaacccctactctagacgagacagcaaaccttgtatggcatcaacatgttcccttgaaagtttcctttgttgcatggcggttgctgaaagataggtt |
517 |
Q |
| |
|
|| || |||| ||||| |||| | |||| |||||||| |||||| | || ||||| || ||||||||| ||||||| |||| |||||||||||| ||||| |
|
|
| T |
40563567 |
tggcagcccccactcttgacgcgtcagcgaaccttgtctggcataagcaggttcctttaaaagtttccattgttgcgtggcagttgctgaaagacaggtt |
40563666 |
T |
|
| Q |
518 |
accaactaaaatcaatctccaaaggcgcggtattactcaggtcacaaacacgttatgtgtttcggggtgcggtatagaggagtcggcctctcacttgttc |
617 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| || ||||||||||| ||| | |||||||| ||||| |||| |||||||||| | || || | |||| |
|
|
| T |
40563667 |
accaactaaattcaatcttcaaaggcgcggtgttgctcaggtcacagacattatgtgtgtttcagggtgtggtaaagaggagtcgacatcccattcgttc |
40563766 |
T |
|
| Q |
618 |
ttacattatcatgtttttggttatctttggaagcttatcggatcttggattggagtgtctggtgttgatacagacaatgtcagtgagcacttccaccaat |
717 |
Q |
| |
|
|| |||| | | ||||||| ||||||| ||| || || ||||||||||||| ||||| || || ||||||| | |||| || || | |||| |
|
|
| T |
40563767 |
tttcattgcaaagcgtttggttctctttggcagcagattatattgtggattggagtgttgggtgtcgacactgacaatgcccgtgatcatttttatcaat |
40563866 |
T |
|
| Q |
718 |
ttattcattattcaggttatacaaaggctcgtcgctcttttcttcaattattatggcttttgtgtgtttggttgctgtggaatgaacgaaacaatagact |
817 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| ||| |||||| | ||||||||||||||| | ||||| ||| || ||||||| ||||||||||| | ||| |
|
|
| T |
40563867 |
ttatccattattcaggttattcaaaggctcatcgatcttttttacaattattatggcttctttgtgtgtggatggtgtggaacgaacgaaacaacaaact |
40563966 |
T |
|
| Q |
818 |
gttcaaaaacacatcaacacctattgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaag-caacaaaaccacttttgtgtacggt |
916 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| ||||||| ||||| ||| ||||||||||||||||| ||| || |||| |||||||||| || |
|
|
| T |
40563967 |
gttcaaaaacactgaaacacctattgagcaactattatataaagttaaattccatttgttgtggtggcttaaagccaataataccatttttgtgtacagt |
40564066 |
T |
|
| Q |
917 |
tctcaaagttggtggtc |
933 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
40564067 |
tctcaaagttggtggtc |
40564083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 786 - 987
Target Start/End: Complemental strand, 5287761 - 5287557
Alignment:
| Q |
786 |
tggttgctgtggaatgaacgaaacaatagactgttcaaaaacacatcaacacctattgagcagctattagataaagtaaaatttcatacgttgtggtggc |
885 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||| ||||||| |||| | ||||||||||||||||| |||| |||||||||||||||||| |||||||||||| |
|
|
| T |
5287761 |
tggttgttgtggaatgaaagaaacaacagattgttcaacaacatagcaacacctattgagcagttattcgataaagtaaaatttcattcgttgtggtggc |
5287662 |
T |
|
| Q |
886 |
ttaaag-caacaaaaccacttttgtgtacggttctcaaagttggtggtcgagccctttata-tgttt-ggcatcgactgacttattcttgtaattatact |
982 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| || || ||||||||| | |||||||||||||| |
|
|
| T |
5287661 |
ttaaagccaacaaaatcacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgacttttccttgtaattatact |
5287562 |
T |
|
| Q |
983 |
ttgtg |
987 |
Q |
| |
|
||||| |
|
|
| T |
5287561 |
ttgtg |
5287557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 795 - 934
Target Start/End: Complemental strand, 18959941 - 18959801
Alignment:
| Q |
795 |
tggaatgaacgaaacaatagactgttcaaaaacacatcaacacctattgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaag-ca |
893 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| |||||||||| | ||||| ||||| ||||| ||| ||||| | ||||||||| | |||| || |
|
|
| T |
18959941 |
tggaatgaacgaaataatagactgttcaataacgttgaaacacctattaaacagctcttagaaaaagttaaacttcattcattgtggtggttaaaagcca |
18959842 |
T |
|
| Q |
894 |
acaaaaccacttttgtgtacggttctcaaagttggtggtcg |
934 |
Q |
| |
|
| ||||| |||||||||||| | ||| | || ||||||||| |
|
|
| T |
18959841 |
ataaaactacttttgtgtacagatctaagagctggtggtcg |
18959801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 934
Target Start/End: Complemental strand, 33150689 - 33150608
Alignment:
| Q |
854 |
agataaagtaaaatttcatacgttgtggtggcttaaagc-aacaaaaccacttttgtgtacggttctcaaagttggtggtcg |
934 |
Q |
| |
|
||||||||||| |||||| | || |||||||||||||| |||||| || |||| |||||||| ||||||| ||||||||| |
|
|
| T |
33150689 |
agataaagtaagatttcactctttatggtggcttaaagctaacaaagtcaattttatgtacggtactcaaagatggtggtcg |
33150608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 3e-82; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 730 - 998
Target Start/End: Complemental strand, 27096960 - 27096689
Alignment:
| Q |
730 |
caggttatacaaaggctcgtcgctcttttcttcaattattatggcttttgtgtgtttggttgctgtggaatgaacgaaacaatagactgttcaaaaacac |
829 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| ||| || |||||||||| |
|
|
| T |
27096960 |
caggttatacaaaggcttgccgctcttttcttcaattattatgattgttgtgtgtttagttgctgtggaatgaacgaaacaacagattgatcaaaaacac |
27096861 |
T |
|
| Q |
830 |
atcaacacctattgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaag-caacaaaaccacttttgtgtacggttctcaaagttgg |
928 |
Q |
| |
|
||||||||||||| ||| | ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27096860 |
tgcaacacctattgaacagttgttagataaagttaaatttcattcgttgtggtggcttaaagccaacaaaaccacttttgtgtacggttctcaaagttgg |
27096761 |
T |
|
| Q |
929 |
tggtcgagccctttata-tgttt-ggcatcgactgacttattcttgtaattatactttgtgggagtttgttt |
998 |
Q |
| |
|
||||||| ||||||||| ||||| || || ||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
27096760 |
tggtcgaaccctttatattgtttgggtattgactgactttttcttataattatactttgtgacagtttgttt |
27096689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 730 - 998
Target Start/End: Original strand, 27181343 - 27181614
Alignment:
| Q |
730 |
caggttatacaaaggctcgtcgctcttttcttcaattattatggcttttgtgtgtttggttgctgtggaatgaacgaaacaatagactgttcaaaaacac |
829 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| ||| || |||||||||| |
|
|
| T |
27181343 |
caggttatacaaaggcttgccgctcttttcttcaattattatgattgttgtgtgtttagttgctgtggaatgaacgaaacaacagattgatcaaaaacac |
27181442 |
T |
|
| Q |
830 |
atcaacacctattgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaag-caacaaaaccacttttgtgtacggttctcaaagttgg |
928 |
Q |
| |
|
||||||||||||| ||| | ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27181443 |
tgcaacacctattgaacagttgttagataaagttaaatttcattcgttgtggtggcttaaagccaacaaaaccacttttgtgtacggttctcaaagttgg |
27181542 |
T |
|
| Q |
929 |
tggtcgagccctttata-tgttt-ggcatcgactgacttattcttgtaattatactttgtgggagtttgttt |
998 |
Q |
| |
|
||||||| ||||||||| ||||| || || ||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
27181543 |
tggtcgaaccctttatattgtttgggtattgactgactttttcttataattatactttgtgacagtttgttt |
27181614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 711 - 987
Target Start/End: Original strand, 8723426 - 8723706
Alignment:
| Q |
711 |
caccaatttattcattattcaggttatacaaaggctcgtcgctcttttcttcaattattatggcttttgtgtgtttggttgctgtggaatgaacgaaaca |
810 |
Q |
| |
|
|||||||||||||||||| || || || ||||||| || || || || |||||| || | ||||| | ||||||||| | ||||||||||| |||||| |
|
|
| T |
8723426 |
caccaatttattcattatacaagtcattcaaaggcgcgacgatcattccttcaactactctggctcctttgtgtttggctagtgtggaatgaaagaaaca |
8723525 |
T |
|
| Q |
811 |
atagactgttcaaaaacacatcaacacctattgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaag--caacaaaaccacttttg |
908 |
Q |
| |
|
| ||| ||||||| |||| |||||||||||| |||| |||| ||||| |||| |||| | ||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
8723526 |
acagattgttcaataacattgaaacacctattgataagctcttaggaaaagtgaaatatcattctttgtggtgg-ttaaagtccaataaaaccacttttg |
8723624 |
T |
|
| Q |
909 |
tgtacggttctcaaagttggtggtcgagccctttat-atgt-ttggcatcgactga-cttattcttgtaattatactttgtg |
987 |
Q |
| |
|
|||||||| |||| | ||| ||||||| |||||||| ||| | || ||||||||| ||| || |||||||||||||||||| |
|
|
| T |
8723625 |
tgtacggtcctcagaattgttggtcgaaccctttatcttgtctaggtatcgactgaccttgtttttgtaattatactttgtg |
8723706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 336 - 414
Target Start/End: Original strand, 8723051 - 8723129
Alignment:
| Q |
336 |
aatgtttctgacaggtggctatgggagccagacaaacatgatggttacacagtaagagacgcctatcatgctctaacat |
414 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| |||||||| |||||||| |||| || ||||||||||| |||| |
|
|
| T |
8723051 |
aatgtttctgacaggtggcagtgggatccagacatccatgatggatacacagtgagaggtgcatatcatgctctgacat |
8723129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 5e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 700 - 944
Target Start/End: Original strand, 12247837 - 12248081
Alignment:
| Q |
700 |
gtgagcacttccaccaatttattcattattcaggttatacaaaggctcgtcgctcttttcttcaattattatggcttttgtgtgtttggttgctgtggaa |
799 |
Q |
| |
|
||||||| || ||||||||||||||||||| ||||||| ||||||||||||| || || | |||||||| |||||| | || |||||| || | ||||| |
|
|
| T |
12247837 |
gtgagcattttcaccaatttattcattatttaggttattcaaaggctcgtcgttcattcttacaattatt-tggcttctttgcgtttggctggtatggaa |
12247935 |
T |
|
| Q |
800 |
tgaacgaaacaatagactgttcaaaaacacatcaacacctattgagcagctattagataaagtaaaatttcatacgttgtggtggcttaaag-caacaaa |
898 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||| ||| |
|
|
| T |
12247936 |
tgaacgaaacaacagactgttcaataacactgaaacacctattgagcagctcttagataaagttaaatttcattcgttgtggtggcttaaagccaataaa |
12248035 |
T |
|
| Q |
899 |
accacttttgtgtacggttctcaaagttggtggtcgagccctttat |
944 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
12248036 |
accacttttgtgttcggttcccaaagttggtggtccagccctttat |
12248081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 717 - 767
Target Start/End: Original strand, 35183058 - 35183108
Alignment:
| Q |
717 |
tttattcattattcaggttatacaaaggctcgtcgctcttttcttcaatta |
767 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | || |||||||||||| |
|
|
| T |
35183058 |
tttattcattattcaggttattcaaaggctcgaaggtcgtttcttcaatta |
35183108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 474 - 563
Target Start/End: Original strand, 12247628 - 12247717
Alignment:
| Q |
474 |
ttgaaagtttcctttgttgcatggcggttgctgaaagataggttaccaactaaaatcaatctccaaaggcgcggtattactcaggtcaca |
563 |
Q |
| |
|
|||||||||||| ||||| | || | ||||||||||| |||||| ||||||| |||| ||||||||||| || ||| |||||||||| |
|
|
| T |
12247628 |
ttgaaagtttccattgttacctgacatttgctgaaagacaggttataaactaaactcaacctccaaaggcgtggcattgttcaggtcaca |
12247717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 1e-31; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 660 - 932
Target Start/End: Complemental strand, 14498026 - 14497755
Alignment:
| Q |
660 |
tcttggattggagtgtctggtgttgatacagacaatgtcagtgagcacttccaccaatttattcattattcaggttatacaaaggctcgtcgctcttttc |
759 |
Q |
| |
|
||||||||||| |||||||| || ||||| || ||| |||||||| || |||||||||||||||||| ||||| || ||||||||||||| || || |
|
|
| T |
14498026 |
tcttggattggcgtgtctggagtcgatactgaaaatactagtgagcattttcaccaatttattcattatacaggtcattcaaaggctcgtcgatcgttct |
14497927 |
T |
|
| Q |
760 |
ttcaattattatggcttttgtgtgtttggttgctgtggaatgaacgaaacaatagactgttcaaaaacacatcaacacctattgagcagctattagataa |
859 |
Q |
| |
|
| |||||| | |||||| | |||||||| || |||||||| |||||||| | ||| ||||||| |||| ||||||||||||||| | ||||| || |
|
|
| T |
14497926 |
tacaattaatctggcttctttgtgtttgactgatgtggaataaacgaaaccacagattgttcaataacattgaaacacctattgagca--tcttagaaaa |
14497829 |
T |
|
| Q |
860 |
agtaaaatttcatacgttgtggtggct-taaagcaacaaaaccacttttgtgtacggttctcaaagttggtggt |
932 |
Q |
| |
|
||| | || |||| ||||||||||| | ||| ||| |||||||||||||||||||||||||| || ||||||| |
|
|
| T |
14497828 |
agttacatatcattcgttgtggtggttaaaaaccaataaaaccacttttgtgtacggttctcagagatggtggt |
14497755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 900 - 934
Target Start/End: Complemental strand, 33095618 - 33095584
Alignment:
| Q |
900 |
ccacttttgtgtacggttctcaaagttggtggtcg |
934 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33095618 |
ccacttttgtgtacggttctcaaagatggtggtcg |
33095584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 717 - 766
Target Start/End: Complemental strand, 19349775 - 19349726
Alignment:
| Q |
717 |
tttattcattattcaggttatacaaaggctcgtcgctcttttcttcaatt |
766 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | || ||||||||||| |
|
|
| T |
19349775 |
tttattcattattcaggttattcaaaggctcgaaggtcgtttcttcaatt |
19349726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 717 - 766
Target Start/End: Original strand, 29977324 - 29977373
Alignment:
| Q |
717 |
tttattcattattcaggttatacaaaggctcgtcgctcttttcttcaatt |
766 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | || ||||||||||| |
|
|
| T |
29977324 |
tttattcattattcaggttattcaaaggctcgaaggtcgtttcttcaatt |
29977373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 892 - 982
Target Start/End: Original strand, 374776 - 374868
Alignment:
| Q |
892 |
caacaaaaccacttttgtgtacggttctcaaagttggtggtcgagccctttata-tgtttgg-catcgactgacttattcttgtaattatact |
982 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
374776 |
caacaaaatcacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttggatatcgactgacttttccttgtaattatact |
374868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 714 - 751
Target Start/End: Original strand, 26904426 - 26904463
Alignment:
| Q |
714 |
caatttattcattattcaggttatacaaaggctcgtcg |
751 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
26904426 |
caattcattcattattcaggttattcaaaggctcgtcg |
26904463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 661 - 791
Target Start/End: Complemental strand, 21989 - 21859
Alignment:
| Q |
661 |
cttggattggagtgtctggtgttgatacagacaatgtcagtgagcacttccaccaatttattcattattcaggttatacaaaggctcgtcgctcttttct |
760 |
Q |
| |
|
|||||||||| ||||||||||| ||| | |||| | ||||| || |||| |||||||| |||||| |||| || ||||| |||| ||||||||||| |
|
|
| T |
21989 |
cttggattggcgtgtctggtgtagatcctctcaatattagtgatcatttccttcaatttatgcattataaaggtcattcaaagtctcgacgctcttttct |
21890 |
T |
|
| Q |
761 |
tcaattattatggcttttgtgtgtttggttg |
791 |
Q |
| |
|
|||||| | |||||| |||||||||||||| |
|
|
| T |
21889 |
ccaattactttggcttctgtgtgtttggttg |
21859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0480 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0480
Description:
Target: scaffold0480; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 3223 - 3288
Alignment:
| Q |
251 |
ttttattgatgacaatgggttgatagatttaccgttgtgtggtcgtcgatacacgtggttcaaagg |
316 |
Q |
| |
|
||||||||| |||||||| ||| |||| || |||||||||||||||| || |||||||| ||||| |
|
|
| T |
3223 |
ttttattgaagacaatggtttgttagacttgtcgttgtgtggtcgtcgttatacgtggtttaaagg |
3288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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