View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418-Insertion-7 (Length: 1000)

Name: NF5418-Insertion-7
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418-Insertion-7
NF5418-Insertion-7
[»] chr8 (2 HSPs)
chr8 (8-839)||(42205366-42206203)
chr8 (863-945)||(42205252-42205342)


Alignment Details
Target: chr8 (Bit Score: 619; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 8 - 839
Target Start/End: Complemental strand, 42206203 - 42205366
Alignment:
Q  8 tatatggatggcatctacctcctattcacctacttcacgaagcctgagtccataaccccccttgagcaaacattattgagggatgataatgttatccgat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42206203 tatatggatggcatctacctcctattcacctacttcacgaagcctgagtccataaccgcccttgagcaaacattattgagggatgataatgttatccgat 42206104  T
Q  108 caacaagcttcaaaatcagaaaaaggaaatattagtttattttggcatctccagtagctctgnnnnnnngaatgtaacaatcatcatttgttgttgtggt 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  42206103 caacaagcttcaaaatcagaaaaaggaaatgttagtttattttggcatctccagtagctctgaaaaaaagaatgtaacaatcatcatttgttgttgtggt 42206004  T
Q  208 atgttttctttcattttcatatggattcaagtatttttgtaacaaggttggattaaactaaaagagagatgtaggtgctattactggcagtctgcagagt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42206003 atgttttctttcattttcatatggattcaagtatttttgtaacaaggttggattaaactaaaagagagatgtaggtgctattactggcagtctgcagagt 42205904  T
Q  308 tataacacctagtacaaagtgctatatattagccaatttgccattcggttgttcac-------------------atatttagaggtagaagttcatttt 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||    
T  42205903 tataacacctagtacaaagtgctatatattagccaatttgccattcggttgttcacatatcaagtctaaattttcatatttagaggtagaagttcatttt 42205804  T
Q  389 gttatcttaaatcatattaggaagaaagtttacaatgactagtgatgaattggagaataatattgcttaatttcataaattatggttataaattgagaag 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||    
T  42205803 gttatcttaaatcatattaggaagaaagtttacaatgactagtgatgaattggagaataatattgcttaatttc-------------ataaattgagaag 42205717  T
Q  489 gtgaaatgcatttatacaaaaagttattagaaaaagaaattacaagagaatggaccaaatggcctgtaaatttaccttacaagcgactggagttccttgg 588  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42205716 gtgaaatgcatttctacaaaaagttattagaaaaagaaattacaagagaatggatcaaatggcctgtaaatttaccttacaagcgactggagttccttgg 42205617  T
Q  589 ttttcaaccggatgataaagtcatnnnnnnnnnnnnnnnnngagggaactgccacatagcaaatggaaata------atttatttttgccgtagtataga 682  Q
    ||||||||||||||||||||||||                 ||||||||||| ||||||||||||||||||      |||||||||||||||||||||||    
T  42205616 ttttcaaccggatgataaagtcat------agcagtagcaggagggaactgctacatagcaaatggaaataatttatatttatttttgccgtagtataga 42205523  T
Q  683 tgtgcactttaccactagcatgttgattgtgacgccgaaaatgcatgcatcttcgctacttgaatatcaaaatatataatcgtttatggcaccgtttgta 782  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  42205522 tgtgcactttaccactagcatgttgattgtgacgccgaaaatgcatgcatcttcgttacttgaatatcaaaatataaaatcgtttatgacaccgtttgta 42205423  T
Q  783 tttatctctatctgtcatttactttaaatcttctacttctacaacttacacacattt 839  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205422 tttatctctatctgtcatttactttaaatcttctacttctacaacttacacacattt 42205366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 863 - 945
Target Start/End: Complemental strand, 42205342 - 42205252
Alignment:
Q  863 tacaatttaccatcaacataattgcacaa-------tgctaaagtccgtagagggatttagattttagctagcttagg-tgctggcttgca 945  Q
    |||||||||||||||||||||||||||||       ||||||| || |||||| |||||||||||||||||||||||| ||||||||||||    
T  42205342 tacaatttaccatcaacataattgcacaacacacaatgctaaattctgtagagagatttagattttagctagcttaggttgctggcttgca 42205252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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