View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418-Insertion-9 (Length: 740)
Name: NF5418-Insertion-9
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418-Insertion-9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 673; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 7 - 740
Target Start/End: Complemental strand, 580872 - 580139
Alignment:
| Q |
7 |
actgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagtgttggctctcatataaattgattttagccgaagcatggcatggg |
106 |
Q |
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| T |
580872 |
actgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagtgttggctctcatataaattgattttagctgaagcatggcatggg |
580773 |
T |
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| Q |
107 |
gacttaattataatgttttgtgatatatcaaaaccgcaaaaactgaattctttcagatcctcagaatcagggaagcagataaatgatttgtcacgtttac |
206 |
Q |
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| T |
580772 |
gacttaattataatgttttgtgatatatcaaaaccgcaaaaactgaattctttcagatcctcagaatcagggaagcagataaatgatttgtcacgtttac |
580673 |
T |
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| Q |
207 |
aaggaacaccgacgctatgttcgattgaaatgctttcaagtagaggcgcgtatatcataaccaaagatgtatcaacaaaccaagcgcagtttttagcctc |
306 |
Q |
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| T |
580672 |
aaggaacaccgacgctatgttcgattgaaatgctttcaagtagaggcgcgtatatcataaccaaagatgtatcaacaaaccaagcgcagtttttagcctc |
580573 |
T |
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| Q |
307 |
aaattttgttaggagggggaattcaagatgaacattgcgccaagatttgggtgagttggtgttaaagtcgattccacacaagtttagaattttcaagttt |
406 |
Q |
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| T |
580572 |
aaattttgttaggagagggaattcaagatgaacattgcgccaagatttgggtgagtcggtgttaaagttgattccacacaagttgagaattttcaagttt |
580473 |
T |
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| Q |
407 |
cgaaatagaatatatttgctgggagcgggaacatcaacggaattaaaagaatttcgaagcaatttcaattcttcatcgtacataggaacattaataaagg |
506 |
Q |
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| T |
580472 |
cgaaatacaatatatttgctgggagcgggaacatcaacggaattaaaagaatttcgaagcaatttcaattcttcatcgtacataggaacattaataaagg |
580373 |
T |
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| Q |
507 |
aaatggaatcagtaagcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagcgagaacggagaatgggatttgnnnnnnngaatg |
606 |
Q |
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| T |
580372 |
aaatggaatcagtaagcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagcgagaacggagaatgggatttgaaaaaaagaatg |
580273 |
T |
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| Q |
607 |
gatttgaagaattttaactctccgcttaaagatgtttgataaccgtgaatctagaaaagaccaattatacaaagtacagagaaaaagagaaacgtgatcc |
706 |
Q |
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| T |
580272 |
gatttgaagaattttaactctccgcttaaagatgtttgataaccatgaatctagaagagaccaattatacaaagtaaagaggaaaagagaaacgtgatcc |
580173 |
T |
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| Q |
707 |
atggctaaactatcgttaagaagaagcgctctgt |
740 |
Q |
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| T |
580172 |
atggctaaactatcgttaagaagaagcgctctgt |
580139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 573
Target Start/End: Complemental strand, 1213916 - 1213863
Alignment:
| Q |
520 |
aagcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagc |
573 |
Q |
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| T |
1213916 |
aagcaattccaattcttctaatagcaaaaagtttttgaaaagagaatcagaagc |
1213863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 1214381 - 1214316
Alignment:
| Q |
68 |
ctctcatataaattgattttagccgaagcatggcatggggacttaattataatgttttgtgatata |
133 |
Q |
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| T |
1214381 |
ctctcatgtaaaatgattttagtagaagcatggcatggggacgtcattaaaatgtgttgtggtata |
1214316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 8192727 - 8192831
Alignment:
| Q |
223 |
atgttcgattgaaatgctttcaagtagaggcgcgtatatcataaccaaagatgtatcaacaaaccaagcgcagtttttagcctcaaattttgttaggagg |
322 |
Q |
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| T |
8192727 |
atgttcaatggaaatactttcaagtagaggagcatctatagagacccaagttgcatcaacaaaccaagcgcagtttttggtctcaaattttgttagaagt |
8192826 |
T |
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| Q |
323 |
gggaa |
327 |
Q |
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| T |
8192827 |
gggaa |
8192831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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