View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_high_1 (Length: 979)

Name: NF5418_high_1
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_high_1
NF5418_high_1
[»] chr4 (1 HSPs)
chr4 (61-969)||(998317-999225)


Alignment Details
Target: chr4 (Bit Score: 839; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 839; E-Value: 0
Query Start/End: Original strand, 61 - 969
Target Start/End: Complemental strand, 999225 - 998317
Alignment:
Q  61 cattctacattataattgtttgaatttcatattctactagagcttatgcattgtatgaatttcatatgacaggaaattgctagacatatctagtatttct 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  999225 cattctacattataattgtttgaatttcatattctactagagcttatgcattgtatgaatttcatatgacaggaaattgctagacatatctagtatttct 999126  T
Q  161 ggtagatctctatgttattttcttcacaatgtttgattctggttacaagtcacagtatattgaaggtcagaaggagaaatttgtgaggtatttttatttt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  999125 ggtagatctctatgttattttcttcacaatgtttgattctggttacaagtcacagtatattgaaggtcagaaggagaaatttgtgaggtatttttatttt 999026  T
Q  261 tggatataacatatcaatgtgattggttannnnnnnattcttttcttatctcaactctccggttctcgagggaaagggactctattaacataagcatctt 360  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  999025 tggatataacatatcaatgtgattggttatttttttattcttttcttatctcaactctccggttctcgagggaaagggactctattaacataagcatctt 998926  T
Q  361 tcagactaatatacagtggatgatgtaggttggatgatttggattccaattcgtcaatgccatctagctcaagtgggatgaagaagttaagatttaattt 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  998925 tcagactaatatacagtggatgatgtaggttggatgatttggattccaattcgtcaatgccatctagctcaagtgggatgaagaagttaagatttaattt 998826  T
Q  461 agattgtttgccttttcttattcccggtcgcgggnnnnnnnnttcgtcgaaatcgtttcgagtcggagtgaaaaagggatcagatggactaatgaatatt 560  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  998825 agattgtttgccttttcttattcccggtcgcgggaaaaaaaattcgtcgaaatcgtttcgagtcggagtgaaaaagggatcagatggactaatgaatatt 998726  T
Q  561 ggaagatcactcaaaagtggagtcacttggggagtttttccagaagatcttaaagtgtcacagaaaaaagtatttgatcctcaagataagaatcttcttt 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  998725 ggaagatcactcaaaagtggagtcacttggggagtttttccagaagatcttaaagtgtcacagaaaaaagtatttgatcctcaagataagaatcttcttt 998626  T
Q  661 attggaacaagtttttcgagattctatgcatcctttctgtagcttgtgatcctttcnnnnnnnatcttccttatttcaaccacaaatcatattgtttagc 760  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  998625 attggaacaagtttttcgagattctatgcatcctttctgtagcttgtgatcctttctttttttatcttccttatttcaaccacaaatcatattgtttagc 998526  T
Q  761 catagataacgatctagcgaagtttactgttatattgagaacaatatgtgattttatttatctcattcgcataagtttccaattccgcaccgccttcatt 860  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  998525 catagataacaatctagcgaagtttactgttatattgagaacaatatgtgattttatttatctcattcgcataagtttccaattccgcaccgccttcatt 998426  T
Q  861 gcaccttcatctcgagtatttggaagaggtgaacttgtcatagatcctggattgatcgcaaagcgatatttacaacgctatttcattattgacttctggt 960  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  998425 gcaccttcatctcgagtatttggaagaggtgaacttgtcatagatcctggattgatcgcaaagcgatatttacaacgctatttcattattgacttctggt 998326  T
Q  961 ctgtgctgc 969  Q
    |||||||||    
T  998325 ctgtgctgc 998317  T

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