View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_high_102 (Length: 241)

Name: NF5418_high_102
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_high_102
NF5418_high_102
[»] chr8 (3 HSPs)
chr8 (1-199)||(36834472-36834670)
chr8 (1-191)||(44055644-44055834)
chr8 (160-199)||(40484829-40484868)
[»] chr2 (1 HSPs)
chr2 (160-217)||(42346240-42346297)
[»] chr7 (1 HSPs)
chr7 (160-199)||(36098964-36099003)
[»] chr1 (1 HSPs)
chr1 (160-199)||(28235588-28235627)
[»] chr4 (1 HSPs)
chr4 (160-208)||(281096-281144)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 36834472 - 36834670
Alignment:
Q  1 cttctgttattaacaaccttctacctcgttctaatgaaaagtgcaacgatttataccttcaaatgcacagctgatcatggaggtggatgaataaagaaga 100  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36834472 cttctgttactaacaatcttctacctcgtgctaatgaaaagtgcaacgatttataccttcaaatgcacagctgatcatggaggtggataaataaagaaga 36834571  T
Q  101 tgaagtgatgaatcaaccaactctgcctgcaaattttgattttatcattaaaattttaaacccggtccggttcactaaaccggccgagttaccgatttt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36834572 tgaagtgatgaatcaaccaactctgcctgcaaattttgattttatcattaaaattttaaacccggtccggttcactaaaccggccgagttaccggtttt 36834670  T

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Target: chr8; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 44055834 - 44055644
Alignment:
Q  1 cttctgttattaacaaccttctacctcgttctaatgaaaagtgcaacgatttataccttcaaatgcacagctgatcatggaggtggatgaataaagaaga 100  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44055834 cttctgttactaacaatcttctacctcgtgctaatgaaaagtgcaacgatttataccttcaaatgcacagctgatcatggaggtggataaataaagaaga 44055735  T
Q  101 tgaagtgatgaatcaaccaactctgcctgcaaattttgattttatcattaaaattttaaacccggtccggttcactaaaccggccgagtta 191  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44055734 tgaagtgatgaatcaaccacctctgcctgcaaattttgattttatcattaaaattttaaacccggtccggttcactaaaccggccgagtta 44055644  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 40484868 - 40484829
Alignment:
Q  160 acccggtccggttcactaaaccggccgagttaccgatttt 199  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  40484868 acccggtccggttcaccaaaccggccgagtcaccgatttt 40484829  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 42346240 - 42346297
Alignment:
Q  160 acccggtccggttcactaaaccggccgagttaccgatttttcccgagttataccggtt 217  Q
    |||||||||||||||| ||||||||||||| |||| |||||  ||||| |||||||||    
T  42346240 acccggtccggttcaccaaaccggccgagtcaccggtttttagcgagtcataccggtt 42346297  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 36099003 - 36098964
Alignment:
Q  160 acccggtccggttcactaaaccggccgagttaccgatttt 199  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  36099003 acccggtccggttcaccaaaccggccgagtcaccgatttt 36098964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 28235588 - 28235627
Alignment:
Q  160 acccggtccggttcactaaaccggccgagttaccgatttt 199  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  28235588 acccggtccggttcaccaaaccggccgagtcaccgatttt 28235627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 281144 - 281096
Alignment:
Q  160 acccggtccggttcactaaaccggccgagttaccgatttttcccgagtt 208  Q
    ||||| |||||||| ||||||||||||||| |||||||| | |||||||    
T  281144 acccgctccggttcgctaaaccggccgagtcaccgatttattccgagtt 281096  T

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