View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_109 (Length: 237)
Name: NF5418_high_109
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_109 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39851254 - 39851475
Alignment:
| Q |
1 |
cccctaaccatagtattataagtacaaacgtccggcaacatatcattcccagtcatcaattcagtaacctcaacaactttcttcaaccatttctacttac |
100 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |
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| T |
39851254 |
cccctaaccattgtattataagtccaaacgtccggcaacatatcattcccagtcatcaattcagtaacctcaacagcttccttcaaccatttcaacttac |
39851353 |
T |
|
| Q |
101 |
aatacccatgaaccaaaatattataagtattcctattaggaacaagaccattatttttcatttgatacaacaaatcccctaactttactcaactgacttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39851354 |
aatacccatgaaccaaaatattataagtattcctattaggaacaagaccattatttttcatttgatacaacaaatcccctaagtttactcaactgacttc |
39851453 |
T |
|
| Q |
201 |
tcttacacagagcagtcaaaac |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
39851454 |
tcttacacagagcagtcaaaac |
39851475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43172014 - 43172234
Alignment:
| Q |
1 |
cccctaaccatagtattataagtacaaacgtccggcaacatatcattcccagtcatcaattcagtaacctcaacaactttcttcaaccatttctacttac |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||| | |||||||||||||| ||| |||||||| || ||| |||||||||||| ||||| |
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| T |
43172014 |
cccctaaccattgtattataagtccaaacatccggcaacatacccttcccagtcatcaactcaataacctcagcagcttctttcaaccatttcagcttac |
43172113 |
T |
|
| Q |
101 |
aatacccatgaaccaaaatattataagtattcctattaggaacaagaccattatttttcatttgatacaacaaatcccctaactttactcaactgacttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| |||||||| ||||||||| | |||||||||||| |
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| T |
43172114 |
aatacccatgaaccaaaatattataagtattcctattaggaaaaagaccactattcttcatttgaagcaacaaat-ccctaacttgagtcaactgacttc |
43172212 |
T |
|
| Q |
201 |
tcttacacagagcagtcaaaac |
222 |
Q |
| |
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||||||||| |||||| ||||| |
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| T |
43172213 |
tcttacacaaagcagttaaaac |
43172234 |
T |
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