View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5418_high_11 (Length: 543)
Name: NF5418_high_11
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 150 - 525
Target Start/End: Original strand, 34056505 - 34056879
Alignment:
| Q |
150 |
gctgagtacgaatattagttggatcagcacccaaattttcaagaacacatgctgccacaccctcaccctcgcgaagaaaacccaataacaggtgctcaga |
249 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34056505 |
gctgagtacgaatattagttggatcagcacccaaattttcaagaacaggtgctgccacaccctcaccctcgcgaagaaaacccaataacaggtgctcaga |
34056604 |
T |
|
| Q |
250 |
tcggatataattatgatctagaaatttcataatgtaagctaaaatttcagcaagcacaaacaaagtattgaacgtgaatacaaatttttaaccacactca |
349 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
34056605 |
tcggatataattatgatctagaaattccataatgtaagctaaaatttcagcaagcacaaacaaagtattgaacgtgaatacaaa-ttttaactacactca |
34056703 |
T |
|
| Q |
350 |
ataaaagaaagagcgaaaaggcaagccaaaaaatgaactaacaacaattcatagataaatttacacacattttgaatgtatttaattcatattgctcaac |
449 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
34056704 |
ataaaagaaagagcgaaaaggcaagccaaaaaatgaactaacaacaattcatagataaatttagactcattttgaatgtatttaattcatattgctcaac |
34056803 |
T |
|
| Q |
450 |
catcgtatcaatcaaagcaacaatcaagtcatgcatggaataaatcatacaaataataagtgatgaacacaatttt |
525 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
34056804 |
catcgtatcaatcaaagcaacaatcaagtcatgcatgaaataaatcatacaaataataagttatgaacacaatttt |
34056879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 34056365 - 34056455
Alignment:
| Q |
9 |
gacatcatcaacaatctgtcgttaagaaaacttggattgtaagttacctcctctgctagcaccaaattaaattaagttgaaagtgcattcc |
99 |
Q |
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| T |
34056365 |
gacatcatcaacaatctgtcgttaagaaaacttggattgtaagttacctcctctgctagcaccaaattaaattaagttgaaagtgcattcc |
34056455 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 4e-73; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 158 - 525
Target Start/End: Complemental strand, 47379671 - 47379307
Alignment:
| Q |
158 |
cgaatattagttggatcagcacccaaattttcaagaacacatgctgccacaccctcaccctcgcgaagaaaacccaataacaggtgctcagatcggatat |
257 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||| | |||||||||||||| ||||| |
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| T |
47379671 |
cgaatattagttggatcagcacccaaattttcaagaacacgtgcggccacaccctcaccctctcgaagaagacccaaaagcaggtgctcagatccgatat |
47379572 |
T |
|
| Q |
258 |
aattatgatctagaaatttcataatgtaagctaaaatttcagcaagcacaaacaaagtattgaacgtgaatacaaatttttaaccacactc--aataaaa |
355 |
Q |
| |
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|||| ||| ||||||||| || ||||||||| ||||||||||||| | ||||| ||||||||| ||||||||||||| ||||||| |
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| T |
47379571 |
aattgtgacctagaaattccaaaatgtaagccaaaatttcagcaaacgtaaaca--------------aatacaaatatttaaccacactccaaataaaa |
47379486 |
T |
|
| Q |
356 |
gaaagagc-ga--------aaaggcaagccaaaaaatgaactaacaacaattcatagataaatttacacacattttgaatgtatttaattcatattgctc |
446 |
Q |
| |
|
|||||||| || |||||| | |||||||| |||||||||||| || ||||||| |||| || || ||||||||||||||||||| |||| || |
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| T |
47379485 |
gaaagagcagaaagcgctgaaaggcgggtcaaaaaataaactaacaacaactcgtagataattttaaactcagtttgaatgtatttaattcaaattggtc |
47379386 |
T |
|
| Q |
447 |
aaccatcgtatcaatcaaagcaacaatcaagtcatgcatggaataaatcatacaaataataagtgatgaacacaatttt |
525 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| |||||||||||||| |||||| |||| |||||||||||||| |
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| T |
47379385 |
aaccatcagatcaatcaaagcaacaatcaaggcatgtttggaataaatcatataaataacaagtcatgaacacaatttt |
47379307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 158 - 508
Target Start/End: Complemental strand, 47815202 - 47814872
Alignment:
| Q |
158 |
cgaatattagttggatcagcacccaaattttcaagaacacatgctgccacaccctcaccctcgcgaagaaaacccaataacaggtgctcagatcggatat |
257 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||| |||||||||||| |||||||| ||||||| | |||| | ||||| ||||| || |||| |
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|
| T |
47815202 |
cgaatattagttggatcatcgcccaaattttcaagaacacgtgctgccacaccttcaccctctcgaagaagatccaaaagcaggttctcagttccaatat |
47815103 |
T |
|
| Q |
258 |
aattatgatctagaaatttcataatgtaagctaaaatttcagcaagcacaaacaaagtattgaacgtgaatacaaatttttaaccacactc--aataaaa |
355 |
Q |
| |
|
|||| ||| ||||||||| || |||||||| ||||||||||||||| ||| ||||||||| |||||| ||||||| ||||||| |
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| T |
47815102 |
aattgtgacctagaaattccaaaatgtaaggcaaaatttcagcaagcgtaaa--------------ggaatacaaaattttaatcacactcaaaataaaa |
47815017 |
T |
|
| Q |
356 |
gaaagagcgaaaaggcaagccaaaaaatgaactaacaacaattcatagataaatttacacacattttgaatgtatttaattcatattgctcaaccatcgt |
455 |
Q |
| |
|
||||||||| |||| | | | |||||| ||||| ||||||||| |||||| || || ||||||||||||||||||| |||| ||||||||| |
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| T |
47815016 |
gaaagagcggaaagacgggtc-aaaaataaactaccaacaattc-------aatttaaactcactttgaatgtatttaattcaaattggtcaaccatcag |
47814925 |
T |
|
| Q |
456 |
atcaatcaaagcaacaatcaagtcatgcatggaataaatcatacaaataataa |
508 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||||||||||| ||||||||| |
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| T |
47814924 |
atcaatcatagcaacaatcaaggcatgtttggaataaatcatataaataataa |
47814872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 47815478 - 47815423
Alignment:
| Q |
13 |
tcatcaacaatctgtcgttaagaaaacttggattgtaagttacctcctctgctagc |
68 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
47815478 |
tcatcaacaatctgtcattaagaaaactaggattgtaagttacctcctctgctagc |
47815423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 47380020 - 47379965
Alignment:
| Q |
13 |
tcatcaacaatctgtcgttaagaaaacttggattgtaagttacctcctctgctagc |
68 |
Q |
| |
|
|||| ||||||||||| || |||||||| ||||||||||||||||||||||||||| |
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|
| T |
47380020 |
tcattaacaatctgtcattgagaaaactaggattgtaagttacctcctctgctagc |
47379965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 45111893 - 45111824
Alignment:
| Q |
158 |
cgaatattagttggatcagcacccaaattttcaagaacacatgctgccacaccctcaccctcgcgaagaa |
227 |
Q |
| |
|
||||||||||| |||||||| || | ||||||||||||| |||||| || ||||||||||| ||||||| |
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|
| T |
45111893 |
cgaatattagtaggatcagcgcctaggttttcaagaacacgtgctgctactccctcaccctctcgaagaa |
45111824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 158 - 525
Target Start/End: Complemental strand, 40242767 - 40242395
Alignment:
| Q |
158 |
cgaatattagttggatcagcacccaaattttcaagaacacatgctgccacaccctcaccctcgcgaagaaaacccaataacaggtgctcagatcggatat |
257 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| |||||||||||| |||||||| ||||||| |||||| | || ||||||||||| ||||| |
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|
| T |
40242767 |
cgaatattagttgggtcggcacccaaattttcaagaacacgtgctgccacaccttcaccctctcgaagaagacccaaaagcaagtgctcagatccgatat |
40242668 |
T |
|
| Q |
258 |
aattatgatctagaaatttcataatgtaagctaaaatttcagcaagcacaaacaaagtattgaacgtgaatacaaatttttaaccacactcaataaaaga |
357 |
Q |
| |
|
|||| ||| ||||||||| || ||||||||| ||| ||||||||||||||| |||||||||| |||||||||| ||||||||| ||| | ||||||| | |
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|
| T |
40242667 |
aattgtgacctagaaattccaaaatgtaagccaaactttcagcaagcacaagcaaagtattgcacgtgaatactaatttttaaacactccaaataaaata |
40242568 |
T |
|
| Q |
358 |
------aagagcgaaaaggcaagccaaaaaatgaactaacaacaattcatagataaatttacacacattttgaatgtatttaattcatattgctcaacca |
451 |
Q |
| |
|
||||||| |||| | | |||||||| || | || |||||||||||||||||| || | |||||||| |||||||||| |||| | ||||| |
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|
| T |
40242567 |
aaacataagagcggaaagaccggacaaaaaat-aaatcacgccaattcatagataaatttcaacttactttgaatgaatttaattcaaattggtgaacca |
40242469 |
T |
|
| Q |
452 |
tcgtatcaatcaaagcaacaatcaagtcatgcatggaataaatcatacaaataataagtgatgaacacaatttt |
525 |
Q |
| |
|
| |||| ||||||||| |||||||||||| ||||||| |||||||||||||||||| |||||||| |||| |
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|
| T |
40242468 |
acagatcactcaaagcaaaaatcaagtcatgtttggaatatatcatacaaataataagtcgtgaacacattttt |
40242395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 40243063 - 40243006
Alignment:
| Q |
12 |
atcatcaacaatctgtcgttaagaaaacttgga-ttgtaagttacctcctctgctagc |
68 |
Q |
| |
|
|||||| |||||||||| | ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
40243063 |
atcatctacaatctgtcatgaagaaaactacgaattgtaagttacctcctctgctagc |
40243006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 17717221 - 17717166
Alignment:
| Q |
13 |
tcatcaacaatctgtcgttaagaaaacttggattgtaagttacctcctctgctagc |
68 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
17717221 |
tcatcaacaatctgtcattaagaaaactaggattgtaagttacctcctccgctagc |
17717166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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