View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_18 (Length: 485)
Name: NF5418_high_18
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 14 - 473
Target Start/End: Original strand, 49094515 - 49094974
Alignment:
| Q |
14 |
gattcaatgtatctgcaaatgaagttatgtgcatctcctctatgcaatctctgataccatcatcacaaggaacaccaacacacaatattccttcttctcc |
113 |
Q |
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| T |
49094515 |
gattcaatgtatctgcaaatgaagttatgtgcatctcctctatgcaatctctgataccatcatcacaaggaacaccaacacacaatattccttcttctcc |
49094614 |
T |
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| Q |
114 |
caatatttaattatattcttttgatgaactagtttctagaattatcacaacgctaactcatcattaacttcacaattaactgttgcaggagcatggaatt |
213 |
Q |
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| T |
49094615 |
cgatatataattatattcttttgatgaactagtttctagaattatcacaacgctaactcatcattaccttcacaactaactgttgcaggagcatggaatt |
49094714 |
T |
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| Q |
214 |
aaaagacgaaactcatttttggtaataattccaattttagataaacacgtacaattaattatatataaacacatagaatattaataacccatttttgcta |
313 |
Q |
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| T |
49094715 |
aaaagacgaaactcatttttggtaataattccaattttagataaacacgtacaattaattatatataaacacatagaatattaataacccatttttgcta |
49094814 |
T |
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| Q |
314 |
tatttttcctagcttgacaatggattgtagatcttcaattaagcttctcctcttcatcctttacttcacttttggtgaaatgttactcgtcccccaacgt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49094815 |
tatttttcctagcttgacaatggattgtagatcttcaattaaacttctcctcttcatcctttacttcacttttggtgaaatgttactcgtcccccaacgt |
49094914 |
T |
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| Q |
414 |
tgacctgaaggcaaatacacctcatctctcactgtaaaattaatttacatgcttcatatt |
473 |
Q |
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| T |
49094915 |
tgacctgaaggcaaatacacctcatctctcactgtaaaattaatttacatgcttcatatt |
49094974 |
T |
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