View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_19 (Length: 479)
Name: NF5418_high_19
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 25 - 319
Target Start/End: Original strand, 54088547 - 54088841
Alignment:
| Q |
25 |
agcaggttctgaagccggttcatatgcagggtctcatgctgggtcagggtcttctagagcgggctctgaagctggttcatatgcaggatctcatgctgga |
124 |
Q |
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| T |
54088547 |
agcaggttctgaagccggttcatatgcagggtctcatgctgggtcagggtcttctagagcgggctctgaagctggttcatatgcaggatctcatgctgga |
54088646 |
T |
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| Q |
125 |
tcaggaagtggaaattaagtaaaatcatatccatattataataaaacttcaccttcactgtgtgatgattaagcaacaatataatctcaataattagttc |
224 |
Q |
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| T |
54088647 |
tcaggaagtggaaattaagtaaaatcatatccatattataataaaacttcaccttcactatgtgatgattaagcaacaatataatttcaataattagttc |
54088746 |
T |
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| Q |
225 |
aatatacattttgtaattcaattctccccttatatatgcatgtgtgtccatggttcaatgtttcttcctttctatttctttgtataaataaacat |
319 |
Q |
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| T |
54088747 |
aatatacattttgtaattcaattctccccttatatatgcatgtgtgtccatggttcaatgtttcttcctttctatttctttgtataaataaacat |
54088841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 360 - 479
Target Start/End: Original strand, 54088916 - 54089036
Alignment:
| Q |
360 |
aaatcctttaaattgatgtaggaacttggatgcttatccaaacgacactttga-gccttattatatcattccaaatttcattttcagtcatgcttatttc |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
54088916 |
aaatcctttaaattgatgtaggaacttggatgcttatccaaacgacactttgctgccttattatatcattccaaatttcattttcagtcatgattaattc |
54089015 |
T |
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| Q |
459 |
aacagctatgatctctaattt |
479 |
Q |
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| T |
54089016 |
aaaagctatgatctctaattt |
54089036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 54088473 - 54088555
Alignment:
| Q |
20 |
tcaggagcaggttctgaagccggttcatatgcagggtctcatgctgggtcagggtcttctagagcgggctctgaagctggttc |
102 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
54088473 |
tcaggagcaggttctgaagccggttcatatgcaggttctcatgctgggtcagggtcttctggagcgggttctgaagcaggttc |
54088555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 54088416 - 54088525
Alignment:
| Q |
23 |
ggagcaggttctgaagccggttcatatgcagggtctcatgctgggtcagggtct---tctagagcgggctctgaagctggttcatatgcaggatctcatg |
119 |
Q |
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| T |
54088416 |
ggagcaggttctgaagccggctcccatgcaggatctcgtgcagggtcaggggctgggtcaggagcaggttctgaagccggttcatatgcaggttctcatg |
54088515 |
T |
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| Q |
120 |
ctggatcagg |
129 |
Q |
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|||| ||||| |
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| T |
54088516 |
ctgggtcagg |
54088525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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