View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5418_high_2 (Length: 761)
Name: NF5418_high_2
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_2 |
 | |
|
| [»] scaffold0466 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 192 - 760
Target Start/End: Original strand, 39779403 - 39779971
Alignment:
| Q |
192 |
aatcaaggaaagatatgagatccattacctcactgatctggccttcaagattttaattgtgatcttggttccaagttctcaaactacctttaatcttttt |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39779403 |
aatcaaggaaagatatgagatccattacctcactgatccggccttcaagattttaattgtgatcttggttccaagttctcaaactacctttaatcttttt |
39779502 |
T |
|
| Q |
292 |
gagtttttcctttagtacaaattctccccaaccatccacgtatgagagtgccattgtttttgaacaaatttcttataacctagaagatccgcccaatatt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39779503 |
gagtttttcctttagtacaaattctccccaaccatccacgtatgagagtgccattgtttttgaacaaatttcttataacctagaagatccgcccaatatt |
39779602 |
T |
|
| Q |
392 |
tccacatacattgaggactaggacctcaattctcctcatcgatggtaatgagactgggcaatggtcagataggcctctgatcaaagcattcattactttt |
491 |
Q |
| |
|
|| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39779603 |
tcaacatacattgaggacgacgacctcaattctcctcatcgatggtaatgagactgggcaatggtcagatagtcctctgatcaaagcattcattactttt |
39779702 |
T |
|
| Q |
492 |
attcatctctatctatcatctttagattacttagaactcaagaaataaaacaagttgcgctagcatgttcacttatagattaattactctgttctctcaa |
591 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39779703 |
attcatctctatcgatcatctttagattacttagaactcaagaaataaaacaagttgcgctaacatgttcacttatagattaattactctgttctctcaa |
39779802 |
T |
|
| Q |
592 |
aggaatggtaaatttgagatttaccatgcattcaaaagaaaattgtgaatgtccttctcagtttgaaacaccgtctaaatcacgtctttcaacnnnnnnn |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39779803 |
aggaatggtaaatttgagatttaccatgcattcaaaagaaaattgtgaatgtccttctcagtttgaaacaccgtctaaatcacgtctttcaacttttttt |
39779902 |
T |
|
| Q |
692 |
nattaacttttaaaagagagattgtgaatgtccttctcaatattttttctgttgatg-atgtccatctca |
760 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
39779903 |
tattagcttttaaaaga-agattgtgaatgtccttctcaatattttttctgtttgtgaatgtccatctca |
39779971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 39777360 - 39777554
Alignment:
| Q |
1 |
attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgg |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39777360 |
attttgggcattgttattgaagctccatcgtgttcagacctcgagtgcataggttcaaacacgcagttgtgtaaactttggggagcaaaaccggatctgg |
39777459 |
T |
|
| Q |
101 |
gttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatccaaaatc |
195 |
Q |
| |
|
|||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39777460 |
gttgtaccggaggtccaccgaaaattcgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatccaaaatc |
39777554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 32743740 - 32743653
Alignment:
| Q |
1 |
attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaa |
89 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| | |||| |||||| |||| |||| |||||||||||||| |||| ||||||| |
|
|
| T |
32743740 |
attttgggtattgtttgtgaagctccatcgtgtt-tggcctcaagtgcatgagttcagacaagcagttgtgtaaaccttggggagcaaa |
32743653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 1094573 - 1094385
Alignment:
| Q |
8 |
gcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttgca- |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||| || | |||||||||||||| ||||||||| |
|
|
| T |
1094573 |
gcattgtttgtgaagctccatcgtgttcaggcctcgagtgcacgagttcacacacgcagttgtgtaaaccttagggagcaaaaccggatttgggttgcac |
1094474 |
T |
|
| Q |
107 |
ccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatccaaaatc |
195 |
Q |
| |
|
|||||| |||| ||||||||||| ||| | || || |||||||| |||||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
1094473 |
ccggagatccaccgaaaatttgctttcaggacagtgacttttgtcacggcacaacaactctcttctatctttcctatctattcaaaatc |
1094385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 1090817 - 1090696
Alignment:
| Q |
5 |
tgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttg |
104 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||| ||||||||| | |||| |||||| ||||||||||| |||| ||| |||||||||| ||||||| |
|
|
| T |
1090817 |
tgggcattgtttgtgaaactccgtcgtgttcaggcctcgagtgtccgagttcagacacgtagttgtgtaaatcttggggagtaaaaccggatttgggttg |
1090718 |
T |
|
| Q |
105 |
caccggaggtccattgaaaatt |
126 |
Q |
| |
|
||| | |||||||| ||||||| |
|
|
| T |
1090717 |
cactgaaggtccatcgaaaatt |
1090696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 34249315 - 34249486
Alignment:
| Q |
1 |
attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctg |
99 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||||||| |||| |||| |||||| |||||| |||| ||||||||| |||| || |
|
|
| T |
34249315 |
attttgggcattgtttatgaagctccatcgtgtt-tgatctcgagtgcacgagttcagacatgcagttatgtaaatcttggggagcaaaactggataatg |
34249413 |
T |
|
| Q |
100 |
ggttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttct |
172 |
Q |
| |
|
||||||| ||||||||| |||||||| || ||| ||||||||||| || |||||||||| ||||||| |
|
|
| T |
34249414 |
agttgcactggaggtccaccgaaaattttctttcagagcaatggttttgaccacggcacaacaaaactcttct |
34249486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 29360204 - 29360373
Alignment:
| Q |
8 |
gcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatct-gggttgca |
106 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| ||||||| ||| ||||||||||||||||||| ||| |||||||| ||||| | |||||||| |
|
|
| T |
29360204 |
gcattgtttatgaagctccatcgtgtttgg-cctcaagtgcacgaattcagacacgcagttgtgtaaaccttgaggagcaaaatcggatattgggttgca |
29360302 |
T |
|
| Q |
107 |
ccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatcttt |
178 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
29360303 |
ccggaggtccaccgaaaatttgctttcaaggcagtgacttttgtc-gggcacaacaattctcttatatcttt |
29360373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 5716850 - 5717026
Alignment:
| Q |
5 |
tgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttg |
104 |
Q |
| |
|
|||||||| || ||||||||||||||| || ||| ||||||| | ||| |||||||||||||||||| ||||| |||||||| |||| ||||||| |
|
|
| T |
5716850 |
tgggcattatttgtgaagctccatcgttttt-gacttcgagtggatgagtttagacacgcagttgtgtaaattttggggagcaaaatcggacttgggttg |
5716948 |
T |
|
| Q |
105 |
caccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttccta |
182 |
Q |
| |
|
||||||| || || | |||||||| ||| |||| |||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
5716949 |
caccggaagtacaccggaaatttgcattcagggcagtggtttttaccacggcacaacaactctcttctatctttccta |
5717026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 8421 - 8234
Alignment:
| Q |
1 |
attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgg |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||| | || |||| ||||||| |||| |||||| |||||||||||| |||| |||||||||||||| | |
|
|
| T |
8421 |
attttgggtattgtttgtgaagctccaacgtgct-ag-cctcaagtgcacgagttcagacacgtagttgtgtaaacattggggagcaaaaccggatatta |
8324 |
T |
|
| Q |
101 |
g-ttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatcc |
189 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||| |||| | | ||||| || ||| |||||| ||||||||||||||| || |||||| |
|
|
| T |
8323 |
aattgcaccagaggtccattggaaatttgctttcatggcagttgcttttgccacggcgcaacaactctcttctatctttcgtatctatcc |
8234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 9229403 - 9229234
Alignment:
| Q |
9 |
cattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatct-gggttgcac |
107 |
Q |
| |
|
||||||| |||||||||||| ||||| | ||| ||||||| |||| |||| ||| |||||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
9229403 |
cattgtttgtgaagctccattgtgttt-gcccttaagtgcacgagttcagacatgcaattgtgtaaaccttggagagcaaaaccggatattgggttgcat |
9229305 |
T |
|
| Q |
108 |
cggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatcttt |
178 |
Q |
| |
|
| |||||| || |||||||| || ||| | | ||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
9229304 |
ctgaggtctatcgaaaattttctttcagagtagtggttttggccacggcacaacaattctcttctatcttt |
9229234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 25678030 - 25678208
Alignment:
| Q |
1 |
attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctg |
99 |
Q |
| |
|
||||||||||||||| ||||||||||| | || | | |||||||||||| |||| || ||| |||||||||||| ||||| ||||||||||||| || |
|
|
| T |
25678030 |
attttgggcattgtttgtgaagctccaacatgct--ggcctcgagtgcacgagttcagatacgtagttgtgtaaaccttggaaagcaaaaccggatattg |
25678127 |
T |
|
| Q |
100 |
ggttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcc |
180 |
Q |
| |
|
| |||||||||||||||| ||||||||||| ||| || ||| |||| || | ||||||| |||||||||||||||| |
|
|
| T |
25678128 |
gattgcaccggaggtccaccgaaaatttgctttcatttcagtggctttttccacgacacaacatctctcttctatctttcc |
25678208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 25391406 - 25391534
Alignment:
| Q |
1 |
attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctg |
99 |
Q |
| |
|
||||||||||||||| |||||||||| ||| | | |||||||||||| |||| || || |||||||||||| |||| |||||||||||||| || |
|
|
| T |
25391406 |
attttgggcattgtttatgaagctccaaagtgct--ggcctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattg |
25391503 |
T |
|
| Q |
100 |
ggttgcaccggaggtccattgaaaatttgct |
130 |
Q |
| |
|
| |||||||||||||||| ||||||||||| |
|
|
| T |
25391504 |
gattgcaccggaggtccaccgaaaatttgct |
25391534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 180
Target Start/End: Original strand, 25358412 - 25358553
Alignment:
| Q |
40 |
ctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctgggttgcaccggaggtccattgaaaatttgctctcaaggc |
138 |
Q |
| |
|
||||||||||| |||| || || |||||||||||| |||| |||||||||||||| ||| |||||||||||||||| ||||||||||| ||| | |
|
|
| T |
25358412 |
ctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgctttcatttc |
25358511 |
T |
|
| Q |
139 |
aatggtttttgtcatggcacaacaattctcttctatctttcc |
180 |
Q |
| |
|
| || |||| || ||||||||| |||||||||||||||| |
|
|
| T |
25358512 |
agtgactttttccacggcacaacatctctcttctatctttcc |
25358553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 40709194 - 40709267
Alignment:
| Q |
39 |
cctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctgggttgcaccgga |
111 |
Q |
| |
|
||||||||||| ||||| |||| ||||| |||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
40709194 |
cctcgagtgcatgggttcagacatgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccgga |
40709267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 3361 - 3287
Alignment:
| Q |
1 |
attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaac |
76 |
Q |
| |
|
||||||| |||| || |||||||||||||||||| |||||||||||||| ||||| |||||| | |||| ||||| |
|
|
| T |
3361 |
attttggacattatttgtgaagctccatcgtgtt-tgacctcgagtgcacgggttcagacacgaaattgtataaac |
3287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 27049173 - 27049206
Alignment:
| Q |
59 |
acacgcagttgtgtaaactttggagagcaaaacc |
92 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
27049173 |
acacgtagttgtgtaaactttggagagcaaaacc |
27049206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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