View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_high_22 (Length: 467)

Name: NF5418_high_22
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_high_22
NF5418_high_22
[»] chr2 (16 HSPs)
chr2 (22-455)||(8920119-8920550)
chr2 (25-73)||(231595-231643)
chr2 (21-78)||(36547233-36547290)
chr2 (26-78)||(8788297-8788349)
chr2 (26-78)||(35451246-35451298)
chr2 (29-73)||(40967377-40967421)
chr2 (26-79)||(22441182-22441235)
chr2 (29-78)||(22523018-22523067)
chr2 (41-78)||(27244663-27244700)
chr2 (26-63)||(40096852-40096889)
chr2 (26-78)||(8775276-8775328)
chr2 (29-73)||(9547415-9547459)
chr2 (41-73)||(11953957-11953989)
chr2 (26-78)||(24393251-24393303)
chr2 (25-81)||(28163930-28163986)
chr2 (21-61)||(42200710-42200750)
[»] chr3 (24 HSPs)
chr3 (21-78)||(33404234-33404291)
chr3 (26-78)||(5117214-5117266)
chr3 (41-73)||(1111859-1111891)
chr3 (26-78)||(30200832-30200884)
chr3 (21-71)||(8139728-8139778)
chr3 (33-71)||(23629780-23629818)
chr3 (45-79)||(48209233-48209267)
chr3 (29-71)||(52453263-52453305)
chr3 (37-78)||(759608-759649)
chr3 (21-78)||(17755127-17755184)
chr3 (21-78)||(19056447-19056504)
chr3 (29-78)||(20400083-20400132)
chr3 (41-78)||(27185483-27185520)
chr3 (25-78)||(35492799-35492852)
chr3 (26-79)||(54230102-54230155)
chr3 (29-78)||(55126012-55126061)
chr3 (29-73)||(1456546-1456590)
chr3 (21-73)||(10440695-10440747)
chr3 (41-73)||(12976620-12976652)
chr3 (21-73)||(22462323-22462374)
chr3 (29-73)||(29791787-29791831)
chr3 (30-62)||(36692177-36692209)
chr3 (26-78)||(45096032-45096084)
chr3 (25-73)||(47039438-47039486)
[»] chr7 (17 HSPs)
chr7 (26-78)||(35142152-35142204)
chr7 (21-73)||(44106639-44106691)
chr7 (41-79)||(3672570-3672608)
chr7 (41-79)||(16577878-16577916)
chr7 (41-79)||(16587746-16587784)
chr7 (41-79)||(35222929-35222967)
chr7 (21-78)||(5833048-5833105)
chr7 (25-62)||(25017803-25017840)
chr7 (30-79)||(34773236-34773285)
chr7 (22-78)||(7249046-7249102)
chr7 (29-81)||(27158893-27158945)
chr7 (29-73)||(28200391-28200435)
chr7 (22-62)||(35763727-35763767)
chr7 (33-65)||(40677199-40677231)
chr7 (41-73)||(42829252-42829284)
chr7 (29-73)||(46856092-46856136)
chr7 (25-73)||(47442498-47442546)
[»] chr1 (14 HSPs)
chr1 (21-73)||(28455351-28455403)
chr1 (29-79)||(41974766-41974816)
chr1 (29-78)||(30279626-30279675)
chr1 (21-73)||(1408446-1408498)
chr1 (29-73)||(32209844-32209888)
chr1 (29-63)||(34899632-34899666)
chr1 (41-79)||(47070853-47070891)
chr1 (41-78)||(12213999-12214036)
chr1 (25-78)||(34808565-34808618)
chr1 (26-78)||(14520950-14521002)
chr1 (41-73)||(16033468-16033500)
chr1 (26-78)||(19262910-19262962)
chr1 (26-62)||(37705147-37705183)
chr1 (29-73)||(40535192-40535236)
[»] chr6 (7 HSPs)
chr6 (29-78)||(29069489-29069538)
chr6 (41-78)||(21847200-21847237)
chr6 (42-78)||(5655326-5655362)
chr6 (41-73)||(8916492-8916524)
chr6 (21-73)||(14049882-14049934)
chr6 (30-78)||(28046185-28046233)
chr6 (41-73)||(28231443-28231475)
[»] chr4 (14 HSPs)
chr4 (41-78)||(43702347-43702384)
chr4 (26-82)||(29808271-29808327)
chr4 (26-73)||(19124625-19124672)
chr4 (25-79)||(21052559-21052613)
chr4 (40-73)||(40847084-40847117)
chr4 (21-61)||(6520094-6520134)
chr4 (41-73)||(7371566-7371598)
chr4 (26-78)||(20403171-20403223)
chr4 (30-78)||(21623426-21623474)
chr4 (21-73)||(30380541-30380593)
chr4 (26-78)||(35021470-35021522)
chr4 (29-73)||(39842018-39842062)
chr4 (29-73)||(46434766-46434810)
chr4 (41-73)||(47007320-47007352)
[»] scaffold0086 (1 HSPs)
scaffold0086 (26-78)||(1613-1665)
[»] scaffold0045 (2 HSPs)
scaffold0045 (29-79)||(63867-63917)
scaffold0045 (29-79)||(71199-71249)
[»] chr5 (7 HSPs)
chr5 (26-80)||(2705519-2705573)
chr5 (25-79)||(11017181-11017235)
chr5 (37-79)||(17861984-17862026)
chr5 (29-79)||(33899849-33899899)
chr5 (21-78)||(31308641-31308698)
chr5 (25-73)||(11647208-11647256)
chr5 (29-73)||(40445994-40446038)
[»] scaffold0053 (1 HSPs)
scaffold0053 (24-73)||(14211-14260)
[»] scaffold0007 (1 HSPs)
scaffold0007 (38-79)||(221028-221069)
[»] chr8 (8 HSPs)
chr8 (25-78)||(2554214-2554267)
chr8 (41-78)||(11771713-11771750)
chr8 (41-73)||(6394775-6394807)
chr8 (26-62)||(7627523-7627559)
chr8 (29-73)||(13449803-13449847)
chr8 (29-73)||(26991763-26991807)
chr8 (41-73)||(29546904-29546936)
chr8 (38-78)||(32223894-32223934)
[»] scaffold0038 (1 HSPs)
scaffold0038 (41-73)||(31940-31972)
[»] scaffold0016 (1 HSPs)
scaffold0016 (41-73)||(99048-99080)


Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 22 - 455
Target Start/End: Complemental strand, 8920550 - 8920119
Alignment:
Q  22 ggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaattcgctagaacgcgattgtttattaagtggaaagtgaatata 121  Q
    |||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| |||| || |||||||||||||| | ||||| |||||||||||    
T  8920550 ggaattcgaacctcaaaccttgcatatattatgtactgtccctaccaactgacctaagttcg-taaaacgcgattgtttaattagtgggaagtgaatata 8920452  T
Q  122 tgattaattgatcgactattatttcagagagnnnnnnnngattcatgactaggataaagtagttagaaagaatataacgtgtagctaggtgggtcatttc 221  Q
    |||||||||||||||||| ||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8920451 tgattaattgatcgactactatttcagagagaaaaaaa-gattcatgactaggataaagtagttagaaagaatataacgtgtagctaggtgggtcatttc 8920353  T
Q  222 gtgtaaaaatgaattagactaaaactgatcacatcacaaatcaattcccatccaagctttagattgaattgactatcatagtattccccacattcttatg 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8920352 gtgtaaaaatgaattagactaaaactgatcacatcacaaatcaattcccgtccaagctttagattgaattgactatcatagtattccacacattcttatg 8920253  T
Q  322 ataagatttaacttgattttattctattctctatccatggtttgaagaggagaatgcctttctaaatgtgaactgcttgtgaatccagaagagtctttca 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8920252 ataagatttaacttgattttattctattctctatccatggtttgaagaggagaatgcctttctaaatgtgaactgcttgtgaatccagaagagtctttga 8920153  T
Q  422 aaatgactaggctgtgttggtctatcactatatt 455  Q
    ||||||||||||| ||||||||||||||||||||    
T  8920152 aaatgactaggctatgttggtctatcactatatt 8920119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 231595 - 231643
Alignment:
Q  25 attcgaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||    
T  231595 attcgaacctcaaaccttgcatatattatgtattgtccataccaactga 231643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 36547233 - 36547290
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||||||||||||||||||||||||||||  ||| ||| || ||||||| ||||    
T  36547233 cggaattcgaacctcaaactttgcatatattatacattatccttaccaactgagctaa 36547290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 8788297 - 8788349
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||| |||  || ||||||||||||||||| |||||||||||||||||    
T  8788297 ttcgaaccttaaatcttacatatattatgtattgttcctatcaactgacctaa 8788349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 35451246 - 35451298
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||| || ||||||||||||||||||||||||| ||| ||||||| ||||    
T  35451246 ttcgaacttctaactttgcatatattatgtattgtctctaccaactgagctaa 35451298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 40967377 - 40967421
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||||    
T  40967377 gaacctcaaaccttgcatatattatgcattgtccttatcaactga 40967421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 22441235 - 22441182
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    ||||||| |||||| || ||||||| ||||||||||| |||||||||| |||||    
T  22441235 ttcgaacttcaaacattacatatatgatgtattgtccttatcaactgagctaaa 22441182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 22523018 - 22523067
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||| ||| |||||||||||||||||||||| || ||||||| ||||    
T  22523018 gaacctcgaaccttgcatatattatgtattgtccataccaactgagctaa 22523067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 27244700 - 27244663
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  27244700 ttgcatatattatgcattgtccctatcaactgagctaa 27244663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 40096889 - 40096852
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccc 63  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  40096889 ttcgaacctcagactttgcatatattatgcattgtccc 40096852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 8775328 - 8775276
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||| |||  || ||||||||||||||| | |||||||||||||||||    
T  8775328 ttcgaaccttaaatcttacatatattatgtattattcctatcaactgacctaa 8775276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 9547415 - 9547459
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||| ||||| |||||||||||||| ||||||| ||||||||||    
T  9547415 gaaccccaaaccttgcatatattatgcattgtccatatcaactga 9547459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 11953989 - 11953957
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||||||||||||||||| |||||||    
T  11953989 ttgcatatattatgtattgtccctaccaactga 11953957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 24393303 - 24393251
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||||| || |||||||||||||| ||||||| || ||||||| ||||    
T  24393303 ttcgaacctcagaccttgcatatattatgcattgtccttaacaactgagctaa 24393251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 28163986 - 28163930
Alignment:
Q  25 attcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaatt 81  Q
    |||||||||||| ||  ||||| ||||||| ||||||| |||||||||| |||||||    
T  28163986 attcgaacctcagaccgtgcatgtattatgcattgtccttatcaactgagctaaatt 28163930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 42200750 - 42200710
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtc 61  Q
    |||||||||||| ||| || |||||||||||||||||||||    
T  42200750 cggaattcgaacatcagaccttgcatatattatgtattgtc 42200710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 33404291 - 33404234
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  33404291 cggaatttgaacctcaaactttacatatattatgtattgtccatatcaactgagctaa 33404234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 5117266 - 5117214
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||||||||| || ||||||||||||||||||| |||||||||| ||||    
T  5117266 ttcgaacctcaaaccttacatatattatgtattgtccttatcaactgagctaa 5117214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 1111859 - 1111891
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactga 73  Q
    |||||||||||||||||||||||||||||||||    
T  1111859 ttgcatatattatgtattgtccctatcaactga 1111891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 30200884 - 30200832
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||||||||| |||||||||||||| ||||||| || ||||||| ||||    
T  30200884 ttcgaacctcaaaccttgcatatattatgcattgtccttagcaactgagctaa 30200832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 8139778 - 8139728
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaact 71  Q
    |||||||||||||||| || |||||||||||||| ||||||| || |||||    
T  8139778 cggaattcgaacctcagaccttgcatatattatgcattgtccataccaact 8139728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 23629818 - 23629780
Alignment:
Q  33 ctcaaactttgcatatattatgtattgtccctatcaact 71  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  23629818 ctcaaaccttgcatatattatatattgtccctatcaact 23629780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 48209233 - 48209267
Alignment:
Q  45 atatattatgtattgtccctatcaactgacctaaa 79  Q
    ||||||||||||||||||||||||||||| |||||    
T  48209233 atatattatgtattgtccctatcaactgagctaaa 48209267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 52453263 - 52453305
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaact 71  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||    
T  52453263 gaacctcgaactttgcatatattatgcattgtccctattaact 52453305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 759608 - 759649
Alignment:
Q  37 aactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||||||||||||| |||||||||| ||||||| ||||    
T  759608 aactttgcatatattatgcattgtccctaccaactgaactaa 759649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 17755184 - 17755127
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||| ||||| | ||| || ||||||||||||||||| |||||||||||| ||||    
T  17755184 cggaatttgaaccccgaaccttacatatattatgtattgttcctatcaactgagctaa 17755127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 19056504 - 19056447
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||| ||||| | ||| || ||||||||||||||||| |||||||||||| ||||    
T  19056504 cggaatttgaaccccgaaccttacatatattatgtattgttcctatcaactgagctaa 19056447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 20400132 - 20400083
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||| || ||||||||||||||||||||| || |||||||| ||||    
T  20400132 gaacctcagaccttgcatatattatgtattgtctctgtcaactgagctaa 20400083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 27185520 - 27185483
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  27185520 ttgcatatattatgtattgtccctaccaactgagctaa 27185483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 35492852 - 35492799
Alignment:
Q  25 attcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||||| |||||||||||||||||| ||||| | || ||||||| ||||    
T  35492852 attcgaacctcgaactttgcatatattatgcattgttcttaccaactgagctaa 35492799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 54230102 - 54230155
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    |||||||| ||||| |||||||||||||| ||||||| || ||||||| |||||    
T  54230102 ttcgaaccccaaaccttgcatatattatgcattgtccttaccaactgagctaaa 54230155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 55126061 - 55126012
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||| ||||    
T  55126061 gaacctcgaaccttgcatatattatgtattgtcctcatcaactgagctaa 55126012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 1456546 - 1456590
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    |||||||| || |||||||||||||  ||||||||||||||||||    
T  1456546 gaacctcagaccttgcatatattatacattgtccctatcaactga 1456590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 10440747 - 10440695
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    |||||||||||||||  || |||||||||||||| |||||| ||| |||||||    
T  10440747 cggaattcgaacctcgtaccttgcatatattatgcattgtctctaccaactga 10440695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 12976620 - 12976652
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactga 73  Q
    |||||||||||||| ||||||||||||||||||    
T  12976620 ttgcatatattatgcattgtccctatcaactga 12976652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 22462374 - 22462323
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||||| ||||| || ||||||||||| ||||||| ||||||||||    
T  22462374 cggaattcgaacc-caaacattacatatattatgcattgtccttatcaactga 22462323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 29791831 - 29791787
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||| || |||||||||||||||||  |||||||||||    
T  29791831 gaacctcaaaccttacatatattatgtattgtttctatcaactga 29791787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 36692177 - 36692209
Alignment:
Q  30 aacctcaaactttgcatatattatgtattgtcc 62  Q
    |||||||||| ||||||||||||||||||||||    
T  36692177 aacctcaaaccttgcatatattatgtattgtcc 36692209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 45096084 - 45096032
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||| || || |||||||||||||| ||||||| |||||||||| ||||    
T  45096084 ttcgaaccacagaccttgcatatattatgcattgtccttatcaactgagctaa 45096032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 47039486 - 47039438
Alignment:
Q  25 attcgaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||| | |||||||||||||||||| ||||||| ||||| ||||    
T  47039486 attcgaaccccgaactttgcatatattatgcattgtccttatcatctga 47039438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 35142152 - 35142204
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||| ||||    
T  35142152 ttcgaacctcaaactttgcatatattatgcattgtccatatcaactgagctaa 35142204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 44106691 - 44106639
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    |||| ||||||||||  |||||||||||||||||||||||| |||||||||||    
T  44106691 cggagttcgaacctcggactttgcatatattatgtattgtctctatcaactga 44106639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 3672570 - 3672608
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  3672570 ttgcatatattatgtattgtccatatcaactgagctaaa 3672608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 16577878 - 16577916
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  16577878 ttgcatatattatgtattgtccctaccaactgagctaaa 16577916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 16587784 - 16587746
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  16587784 ttgcatatattatgtattgtccctaccaactgagctaaa 16587746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 35222967 - 35222929
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  35222967 ttgcatatatcatgcattgtccctatcaactgacctaaa 35222929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 5833105 - 5833048
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||||||| ||||  |||||||||||||| ||| |||||| ||||||| ||||    
T  5833105 cggaattcgaaccacaaatattgcatatattatgcattatccctaccaactgagctaa 5833048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 25017803 - 25017840
Alignment:
Q  25 attcgaacctcaaactttgcatatattatgtattgtcc 62  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  25017803 attcgaacctccaactttacatatattatgtattgtcc 25017840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 34773285 - 34773236
Alignment:
Q  30 aacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    ||||||| || |||||||||||||| |||||||||| ||||||| |||||    
T  34773285 aacctcataccttgcatatattatgcattgtccctaccaactgaactaaa 34773236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 7249046 - 7249102
Alignment:
Q  22 ggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||||||  | || ||||||||||||||||||||||| || ||||||| ||||    
T  7249046 ggaattcgaacaccgaattttgcatatattatgtattgtccttaccaactgatctaa 7249102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 27158893 - 27158945
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaatt 81  Q
    |||||||||||||||||||||||||  ||||| | || ||||||| |||||||    
T  27158893 gaacctcaaactttgcatatattattcattgttcttaccaactgagctaaatt 27158945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 28200391 - 28200435
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||| || ||||||||||||||||||||| |||| |||||||    
T  28200391 gaacctcgaattttgcatatattatgtattgttcctaccaactga 28200435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 35763767 - 35763727
Alignment:
Q  22 ggaattcgaacctcaaactttgcatatattatgtattgtcc 62  Q
    |||||||||| |||| ||||||||||||||||| |||||||    
T  35763767 ggaattcgaatctcatactttgcatatattatgcattgtcc 35763727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 40677231 - 40677199
Alignment:
Q  33 ctcaaactttgcatatattatgtattgtcccta 65  Q
    ||||||||||| |||||||||||||||||||||    
T  40677231 ctcaaactttgtatatattatgtattgtcccta 40677199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 42829252 - 42829284
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactga 73  Q
    |||||||||||||| ||||||||||||||||||    
T  42829252 ttgcatatattatgcattgtccctatcaactga 42829284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 46856136 - 46856092
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||| ||||||| |||||||||||||| | ||||||||||||    
T  46856136 gaacctcgaactttgtatatattatgtattattcctatcaactga 46856092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 47442546 - 47442498
Alignment:
Q  25 attcgaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||| | ||||| |||||||||||||||||||||| || |||||||    
T  47442546 attcgaatcccaaaccttgcatatattatgtattgtccttaccaactga 47442498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 28455351 - 28455403
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||| |||||||    
T  28455351 cggaattcgaaccccaaactttgcatatattatgcattgtctctaccaactga 28455403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 41974816 - 41974766
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||| |||||    
T  41974816 gaacctcaaaccttgcatatattatgcattatccctatcaactgaactaaa 41974766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 30279626 - 30279675
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||| ||| |||||||||||||||||||| |||||||||||| ||||    
T  30279626 gaacctccaacattgcatatattatgtattgtacctatcaactgagctaa 30279675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 1408498 - 1408446
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    |||||||||||| || |||||||||||||||||| ||||||| || |||||||    
T  1408498 cggaattcgaacttcgaactttgcatatattatgcattgtccttaccaactga 1408446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 32209844 - 32209888
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||| ||| |||||||||||||||||||| ||||||||||||    
T  32209844 gaacctcgaacgttgcatatattatgtattgttcctatcaactga 32209888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 34899632 - 34899666
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccc 63  Q
    ||||| |||||||||||||||||||||||||||||    
T  34899632 gaaccccaaactttgcatatattatgtattgtccc 34899666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 47070891 - 47070853
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  47070891 ttgcatatattatgtattgttcctatcaactgaactaaa 47070853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 12214036 - 12213999
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  12214036 ttgcatatattatgtattgttcctatcaactgagctaa 12213999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 34808565 - 34808618
Alignment:
Q  25 attcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||||| ||| |||||||||||||| ||||||| || ||||||| ||||    
T  34808565 attcgaacctcgaaccttgcatatattatgcattgtccttaacaactgagctaa 34808618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 14521002 - 14520950
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||| |||||||||||||| ||||| ||||||| || ||||||| ||||    
T  14521002 ttcgaaccccaaactttgcatattttatgcattgtccataccaactgagctaa 14520950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 16033468 - 16033500
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactga 73  Q
    |||||||||||||| ||||||||||||||||||    
T  16033468 ttgcatatattatgcattgtccctatcaactga 16033500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 19262910 - 19262962
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||| | |||||||||||| ||||| ||||||| |||||||||| ||||    
T  19262910 ttcgaaccccgaactttgcatatgttatgcattgtccttatcaactgagctaa 19262962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 37705183 - 37705147
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtcc 62  Q
    |||||||||||||| |||||||||||||| |||||||    
T  37705183 ttcgaacctcaaacattgcatatattatgcattgtcc 37705147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 40535192 - 40535236
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||||||||||||||| | ||||| ||||| |||||||    
T  40535192 gaacctcaaactttgcatatattttatattgaccctaccaactga 40535236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 29069538 - 29069489
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||| ||||    
T  29069538 gaacctcagacttttcatatattatgcattgtccctatcaactgagctaa 29069489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 21847237 - 21847200
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  21847237 ttgcatatattatgtattgtccctaccaactgagctaa 21847200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 5655326 - 5655362
Alignment:
Q  42 tgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  5655326 tgcatatattatgtattgtccctaccaactgagctaa 5655362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 8916492 - 8916524
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||||||||||||||||| |||||||    
T  8916492 ttgcatatattatgtattgtccctaccaactga 8916524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 14049882 - 14049934
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||| |||||||| || |||||||||||||| |||||| | |||||||||    
T  14049882 cggaatttgaacctcagaccttgcatatattatgcattgtctcaatcaactga 14049934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 28046185 - 28046233
Alignment:
Q  30 aacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||||| |||||||||||||| ||||||  |||||||||| ||||    
T  28046185 aacctcaaaccttgcatatattatgcattgtctttatcaactgaactaa 28046233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 28231443 - 28231475
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactga 73  Q
    |||||||||||||| ||||||||||||||||||    
T  28231443 ttgcatatattatgcattgtccctatcaactga 28231475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 43702347 - 43702384
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  43702347 ttgcatatattatgtattgtccctatcaactgagctaa 43702384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 29808271 - 29808327
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaattc 82  Q
    |||||||| || || |||||||||||||| ||||||| |||||||||| ||||||||    
T  29808271 ttcgaaccccataccttgcatatattatgcattgtccttatcaactgatctaaattc 29808327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 19124625 - 19124672
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||| || |||||||||||||||||||||  ||||||||||    
T  19124625 ttcgaacctcagaccttgcatatattatgtattgtctttatcaactga 19124672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 21052559 - 21052613
Alignment:
Q  25 attcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    |||||||||||| || |||||||||||||||||| ||| || ||||||| |||||    
T  21052559 attcgaacctcataccttgcatatattatgtattatccataccaactgagctaaa 21052613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 40847084 - 40847117
Alignment:
Q  40 tttgcatatattatgtattgtccctatcaactga 73  Q
    |||||||||||||||||||||| |||||||||||    
T  40847084 tttgcatatattatgtattgtctctatcaactga 40847117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 6520134 - 6520094
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtc 61  Q
    |||| |||||||||||||| |||||||||||||| ||||||    
T  6520134 cggagttcgaacctcaaaccttgcatatattatgcattgtc 6520094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 7371566 - 7371598
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactga 73  Q
    |||||||||||||||||||||| ||||||||||    
T  7371566 ttgcatatattatgtattgtccttatcaactga 7371598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 20403171 - 20403223
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||| ||| || |||||||||||||| ||||| |||||||||||| ||||    
T  20403171 ttcgaacttcagaccttgcatatattatgcattgttcctatcaactgagctaa 20403223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 21623426 - 21623474
Alignment:
Q  30 aacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||| || |||||||||||||| |||||||||| ||||||| ||||    
T  21623426 aacctcagaccttgcatatattatgcattgtccctaccaactgaactaa 21623474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 30380593 - 30380541
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||||| ||||| |||||||||||||  ||||||| || |||||||    
T  30380593 cggaattcgaaccccaaaccttgcatatattatacattgtccttaccaactga 30380541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 35021470 - 35021522
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    |||||||| | ||| |||||||| ||||||||||||| |||||||||| ||||    
T  35021470 ttcgaaccccgaaccttgcatattttatgtattgtccatatcaactgagctaa 35021522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 39842018 - 39842062
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||| || ||||||||||| ||||||| ||||||||||    
T  39842018 gaacctcaaaccttacatatattatgcattgtccttatcaactga 39842062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 46434766 - 46434810
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||| || ||||||||||| ||||||| ||||||||||    
T  46434766 gaacctcaaaccttacatatattatgcattgtccttatcaactga 46434810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 47007320 - 47007352
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||||||||||||||||| |||||||    
T  47007320 ttgcatatattatgtattgtccctaacaactga 47007352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 1665 - 1613
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||||| |  ||| ||||||||||||||||||||||||||| ||||||    
T  1665 ttcgaacctcataacttggatatattatgtattgtccctatcaactaacctaa 1613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 63917 - 63867
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    ||||||||||||||| |||||||||  |||||||||| ||||||| |||||    
T  63917 gaacctcaaactttgtatatattatacattgtccctaccaactgagctaaa 63867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 71249 - 71199
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    ||||||||||||||| |||||||||  |||||||||| ||||||| |||||    
T  71249 gaacctcaaactttgtatatattatacattgtccctaccaactgagctaaa 71199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 2705519 - 2705573
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaat 80  Q
    ||||||||||| || || ||||||||||||||||| | |||||||||| ||||||    
T  2705519 ttcgaacctcagaccttacatatattatgtattgttcttatcaactgagctaaat 2705573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 11017235 - 11017181
Alignment:
Q  25 attcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    |||||||||||| || |||||||||||||| ||| |||||| ||||||| |||||    
T  11017235 attcgaacctcagaccttgcatatattatgcattatccctaccaactgagctaaa 11017181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 17862026 - 17861984
Alignment:
Q  37 aactttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    |||||||||||||||||| |||||||||| ||||||| |||||    
T  17862026 aactttgcatatattatgcattgtccctaccaactgagctaaa 17861984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 33899849 - 33899899
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    ||||||||||| | |||||||||||||||||| |||||||| ||| |||||    
T  33899849 gaacctcaaacatcgcatatattatgtattgttcctatcaattgagctaaa 33899899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 31308641 - 31308698
Alignment:
Q  21 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||||||||| ||| ||||||||||||| |||||||  || ||||||| ||||    
T  31308641 cggaattcgaacctctaaccttgcatatattatatattgtctttaccaactgagctaa 31308698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 11647256 - 11647208
Alignment:
Q  25 attcgaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||| ||||| |||||||||||||| ||||||| || |||||||    
T  11647256 attcgaaccccaaaccttgcatatattatgcattgtccttaccaactga 11647208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 40446038 - 40445994
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    |||||||| || |||||||||||||| ||||||| ||||||||||    
T  40446038 gaacctcagaccttgcatatattatgcattgtccttatcaactga 40445994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 14260 - 14211
Alignment:
Q  24 aattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    |||| ||||||||||| || |||||||||||||||||  |||||||||||    
T  14260 aatttgaacctcaaaccttacatatattatgtattgttactatcaactga 14211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 221028 - 221069
Alignment:
Q  38 actttgcatatattatgtattgtccctatcaactgacctaaa 79  Q
    ||||||||||||||||||||| |||||| ||||||| |||||    
T  221028 actttgcatatattatgtattatccctaccaactgagctaaa 221069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 2554214 - 2554267
Alignment:
Q  25 attcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||| || || |||||||| ||||||||||||| |||||||||| ||||    
T  2554214 attcgaaccccagaccttgcatattttatgtattgtccatatcaactgagctaa 2554267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 11771750 - 11771713
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  11771750 ttgcatatattatgtattgtctctatcaactgagctaa 11771713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 6394775 - 6394807
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||||||| |||||||||||||||||    
T  6394775 ttgcatatattatgttttgtccctatcaactga 6394807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 7627559 - 7627523
Alignment:
Q  26 ttcgaacctcaaactttgcatatattatgtattgtcc 62  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  7627559 ttcgaacctcaaaatttgcatttattatgtattgtcc 7627523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 13449803 - 13449847
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||    
T  13449803 gaacctcgaactttgcatatattatgcatggtccctaccaactga 13449847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 26991763 - 26991807
Alignment:
Q  29 gaacctcaaactttgcatatattatgtattgtccctatcaactga 73  Q
    ||||| ||||| |||||||||||||| ||||||| ||||||||||    
T  26991763 gaaccacaaaccttgcatatattatgcattgtccatatcaactga 26991807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 29546936 - 29546904
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactga 73  Q
    ||||||||||||| |||||||||||||||||||    
T  29546936 ttgcatatattatctattgtccctatcaactga 29546904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 32223894 - 32223934
Alignment:
Q  38 actttgcatatattatgtattgtccctatcaactgacctaa 78  Q
    ||||||||||||||||| |||||| ||||||||||| ||||    
T  32223894 actttgcatatattatgcattgtctctatcaactgaactaa 32223934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 31940 - 31972
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactga 73  Q
    |||||||||||||| ||||||||||||||||||    
T  31940 ttgcatatattatgcattgtccctatcaactga 31972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 99080 - 99048
Alignment:
Q  41 ttgcatatattatgtattgtccctatcaactga 73  Q
    |||||||||||||| ||||||||||||||||||    
T  99080 ttgcatatattatgcattgtccctatcaactga 99048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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