View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_23 (Length: 465)
Name: NF5418_high_23
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 24 - 424
Target Start/End: Original strand, 38352606 - 38352997
Alignment:
| Q |
24 |
tttagtttgacgataaatttaacaaattcacaatagtattataattttgtcgaaacttcaaagtgtagattttacaaaattcatgccaaaatagtgtgat |
123 |
Q |
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| T |
38352606 |
tttagtttgacgataaatttaacaaattcacaatagtgttataattttgccgaaacttcaaagtgtagattttacgaaattcatgccaaaatagtgtgat |
38352705 |
T |
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| Q |
124 |
tcagtcaaattgatcgtcaatctaggtaatatgtgaaaaactttttgattggtttgtgaattaaacaataacaatgtatgtgtataactcaacttcttct |
223 |
Q |
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| T |
38352706 |
tcggtcaa------------tctaggtaatatgtgaaaaactttttggttggtttgtgaattaaacaataacaatgtatgtgtataactcaacttcttct |
38352793 |
T |
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| Q |
224 |
atatcatctctcttgaaaaaattgttcgcatctcctctttattttannnnnnngtcaaacctttttctgacctctatcaagtttcttctaacattaaaat |
323 |
Q |
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| T |
38352794 |
atatcatctctcttgaaaaaattgttcgcatctcctctttattttgtttttttgtcaaacctttttctgacctctatcaagtttcttctaacattaaaat |
38352893 |
T |
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| Q |
324 |
cacatcctttggtattgttttctctcc---aaacaacgcaatgtttcccttgcccatcataaccatttcttttctcttcatcaacagcaagataagacaa |
420 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38352894 |
cacatcctttggtattgttttctctccaaaaaacaacgcaatgtttcccttgcccatcataaccatttcttttctcttcatcaacagcaagataagacaa |
38352993 |
T |
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