View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_high_25 (Length: 459)

Name: NF5418_high_25
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_high_25
NF5418_high_25
[»] chr7 (14 HSPs)
chr7 (22-450)||(25492400-25492846)
chr7 (22-277)||(25500970-25501224)
chr7 (158-274)||(25642393-25642509)
chr7 (340-436)||(25474062-25474158)
chr7 (340-436)||(25642204-25642300)
chr7 (325-393)||(25500834-25500902)
chr7 (344-433)||(25449753-25449842)
chr7 (340-448)||(25431393-25431501)
chr7 (158-274)||(25431184-25431300)
chr7 (158-250)||(25449963-25450055)
chr7 (158-264)||(25473844-25473950)
chr7 (179-264)||(25429197-25429282)
chr7 (45-96)||(25450102-25450155)
chr7 (67-97)||(25429355-25429385)
[»] chr5 (2 HSPs)
chr5 (158-279)||(495153-495274)
chr5 (375-448)||(495394-495467)
[»] chr2 (5 HSPs)
chr2 (345-433)||(35101344-35101432)
chr2 (375-436)||(35173936-35173997)
chr2 (375-418)||(35050634-35050677)
chr2 (340-397)||(35152807-35152864)
chr2 (345-433)||(35093039-35093127)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 450
Target Start/End: Complemental strand, 25492846 - 25492400
Alignment:
Q  22 gtcagtaattaacgatggtattggtaaataattttcaattaatattgtcatatcatgtttaagaagataattacctctcagggattggagaattatatat 121  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      
T  25492846 gtcagtaattaacgatggtattagtaaataattttcaattaatattgtcatatcatgtttaagaagataattacctctcagggataggagaattatattg 25492747  T
Q  122 tgnnnnnnnnnnncttcatcatggactttaaggaataaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttca 221  Q
    ||           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25492746 tgtttttttatttcttcatcatggactttaagtaataaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttca 25492647  T
Q  222 tcagaaacatgccaattgtaaggaagttggattttaggctcaatgctactgcttctttcannnnnnnncacaatctgtaaaggaagag-------atctc 314  Q
    ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||       |||||    
T  25492646 tcacaaacataccaattgtaaggaagttggattttaggctcaatgctactgcttctttctttttgtttcacaatctgtaaaggaagagatatcttatctc 25492547  T
Q  315 t-----ttgaga------aagtcttggttactgcgtgcaacccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcctgtttt 403  Q
    |     |||| |      |  | |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25492546 tcggtattgatagctttaatttattggctactgcgtgcaacccccatttcttgataatcaaaccttgccgggctttaaatgtgatatgtgctcctgtttt 25492447  T
Q  404 tacaaaatgacagtgttttcgagagatatagataacccaaatatatt 450  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||    
T  25492446 tacaaaatggcagtgttttcgagagatatagataacccaaagatatt 25492400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 25501224 - 25500970
Alignment:
Q  22 gtcagtaattaacgatggtattggtaaataattttcaattaatattgtcatatcatgtttaagaagataattacctctcagggattggagaattatatat 121  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||| | ||||||||||||      
T  25501224 gtcagtaattaacgatggtattggtaaataattttcatataatattgtcatatcatgtttaagaagataattacctc--agggctaggagaattatattg 25501127  T
Q  122 tgnnnnnnnnnnncttcatc-atggactttaaggaataaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttc 220  Q
    ||           | | ||  |||||||||||| || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  25501126 tgttttttttcttcattatggatggactttaagtaaaaaggccaagattaaagagattagttactttccccttggcttgtttcatctcgacttcatcttc 25501027  T
Q  221 atcagaaacatgccaattgtaaggaagttggattttaggctcaatgctactgcttct 277  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25501026 atcagaaacataccaattgtaaggaagttggattttaggctcaatgctactgcttct 25500970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 25642509 - 25642393
Alignment:
Q  158 aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggatttta 257  Q
    ||||||||||||||||||||||||||||||||||||||||   | | ||||| ||||||||||||||||||||  |||||||||||| ||||||||||||    
T  25642509 aaggccaagattaaagagatcagtttctttccccttggctccatccttctcggcttcatcttcatcagaaacaaaccaattgtaagggagttggatttta 25642410  T
Q  258 ggctcaatgctactgct 274  Q
    ||||||| |||||||||    
T  25642409 ggctcaaagctactgct 25642393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 340 - 436
Target Start/End: Original strand, 25474062 - 25474158
Alignment:
Q  340 gcaacccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatatagat 436  Q
    |||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||  ||||||||| ||||    
T  25474062 gcaacccccattccttaataatcaaaccttggcgggctttaaatgtgatttgtactcctgtttctacaaaatgacagtgttcccgagagataaagat 25474158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 340 - 436
Target Start/End: Complemental strand, 25642300 - 25642204
Alignment:
Q  340 gcaacccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatatagat 436  Q
    |||| ||||||| |||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||| |||||||  ||||||||||||||    
T  25642300 gcaatccccattccttgataatcaaaccttggcgagctttaaatgtgatttgtgctcctgttttcacaaaatggcagtgttcccgagagatatagat 25642204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 25500902 - 25500834
Alignment:
Q  325 tcttggttactgcgtgcaacccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtg 393  Q
    |||||| ||| || ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  25500902 tcttggctacggcatgcaacccccattccttgataatcaaaccttgccgggctttaaatgtgatatgtg 25500834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 344 - 433
Target Start/End: Complemental strand, 25449842 - 25449753
Alignment:
Q  344 cccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatata 433  Q
    |||||||| |||||||||||||||||    ||||||||||||||||| ||| | |||||||||||| ||||||||||  |||||||||||    
T  25449842 cccccattccttgataatcaaaccttcagaggctttaaatgtgatatctgcccgtgtttttacaaagtgacagtgttcccgagagatata 25449753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 448
Target Start/End: Original strand, 25431393 - 25431501
Alignment:
Q  340 gcaacccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatatagataac 439  Q
    |||||||||||| ||| |||||||||||||  |  |||||||||||||| |||||||| |||| ||| ||||| |||||||  ||||||||| |||| |     
T  25431393 gcaacccccattccttaataatcaaaccttcgcatgctttaaatgtgatttgtgctcccgtttctacgaaatggcagtgttcccgagagataaagatcat 25431492  T
Q  440 ccaaatata 448  Q
    |||||||||    
T  25431493 ccaaatata 25431501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 274
Target Start/End: Original strand, 25431184 - 25431300
Alignment:
Q  158 aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggatttta 257  Q
    ||||||||||||| ||||| || |||| |||| |||||||   | | ||||| |||||||||  ||||||||   ||||||||||||||||||||||||     
T  25431184 aaggccaagattagagagaccaatttccttccgcttggctgcatccttctcggcttcatctttgtcagaaactaaccaattgtaaggaagttggattttc 25431283  T
Q  258 ggctcaatgctactgct 274  Q
    |||||||  ||||||||    
T  25431284 ggctcaaatctactgct 25431300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 25450055 - 25449963
Alignment:
Q  158 aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttg 250  Q
    ||||||||||||||||||||||||||| |||||||||||||  |   ||||| |||||||||| | ||||||   ||||||||||||| ||||    
T  25450055 aaggccaagattaaagagatcagtttccttccccttggcttcatctttctcggcttcatcttctttagaaactaaccaattgtaaggatgttg 25449963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 264
Target Start/End: Original strand, 25473844 - 25473950
Alignment:
Q  158 aaggccaagattaaagagatcagtttctttccccttggcttgtttca-tctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggatttt 256  Q
    ||||||||||||||||||||| |||||||| ||||||| || | ||| |||||| |  |||||| | ||||||   ||||||||||||||||||||||||    
T  25473844 aaggccaagattaaagagatcggtttcttttcccttgg-ttctatcattctcgattgaatcttcgttagaaactaaccaattgtaaggaagttggatttt 25473942  T
Q  257 aggctcaa 264  Q
    || |||||    
T  25473943 agtctcaa 25473950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 25429282 - 25429197
Alignment:
Q  179 agtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggattttaggctcaa 264  Q
    ||||||||| ||||| | ||  ||| ||||||||| |||||||||||||||   ||||||||||||| ||| ||||||||||||||    
T  25429282 agtttctttgcccttagattccttcgtctcgactttatcttcatcagaaactaaccaattgtaaggatgttagattttaggctcaa 25429197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 25450155 - 25450102
Alignment:
Q  45 gtaaataattttcaattaatattgt--catatcatgtttaagaagataattacc 96  Q
    ||||||| |||||||||||||||||  ||||||||||||||||| |||||||||    
T  25450155 gtaaatagttttcaattaatattgtggcatatcatgtttaagaacataattacc 25450102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 97
Target Start/End: Complemental strand, 25429385 - 25429355
Alignment:
Q  67 tgtcatatcatgtttaagaagataattacct 97  Q
    |||||||||||||||||||||||||||||||    
T  25429385 tgtcatatcatgtttaagaagataattacct 25429355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 279
Target Start/End: Original strand, 495153 - 495274
Alignment:
Q  158 aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggatttta 257  Q
    |||||| |||||||||||||   ||||||| |||||||||| ||   |||| ||||||||||||||||||||   ||||||||||||||| | |||||||    
T  495153 aaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcatcagaaactgaccaattgtaaggaagcttgatttta 495252  T
Q  258 ggctcaatgctactgcttcttt 279  Q
    |||||||  || ||||||||||    
T  495253 ggctcaactcttctgcttcttt 495274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 375 - 448
Target Start/End: Original strand, 495394 - 495467
Alignment:
Q  375 gctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatatagataacccaaatata 448  Q
    |||||||| ||||| |||||||||||||| |||||||| |||||||  |||||||||||||| |||||||||||    
T  495394 gctttaaacgtgatctgtgctcctgttttcacaaaatggcagtgttcacgagagatatagattacccaaatata 495467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 433
Target Start/End: Original strand, 35101344 - 35101432
Alignment:
Q  345 ccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatata 433  Q
    |||||||| || || | ||||||| | | ||||||||| |||||||||||||||||||| ||||||||||| || | ||||||||||||    
T  35101344 ccccatttttttatcaccaaacctggacaggctttaaaagtgatatgtgctcctgttttcacaaaatgacaatgctctcgagagatata 35101432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 436
Target Start/End: Original strand, 35173936 - 35173997
Alignment:
Q  375 gctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatatagat 436  Q
    ||||||||||||||||||||||||||| |||||||||| |||||   || ||||||||||||    
T  35173936 gctttaaatgtgatatgtgctcctgttgttacaaaatggcagtggggtctagagatatagat 35173997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Original strand, 35050634 - 35050677
Alignment:
Q  375 gctttaaatgtgatatgtgctcctgtttttacaaaatgacagtg 418  Q
    |||||||||||||| |||||||||||| |||||||||| |||||    
T  35050634 gctttaaatgtgatttgtgctcctgttgttacaaaatggcagtg 35050677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 397
Target Start/End: Complemental strand, 35152864 - 35152807
Alignment:
Q  340 gcaacccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcc 397  Q
    |||| ||||||||||| || |||||||||   | ||||||||||||||||||||||||    
T  35152864 gcaatccccatttcttcatgatcaaacctgtgcaggctttaaatgtgatatgtgctcc 35152807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 433
Target Start/End: Original strand, 35093039 - 35093127
Alignment:
Q  345 ccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatata 433  Q
    ||||||||||  || | ||||||| | | |||||||||||||||||||| ||||||||  ||||| || || || | ||||||||||||    
T  35093039 ccccatttctctatcaccaaacctgggcaggctttaaatgtgatatgtgatcctgtttcaacaaagtggcaatggtctcgagagatata 35093127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University