View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5418_high_3 (Length: 704)
Name: NF5418_high_3
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 254 - 686
Target Start/End: Complemental strand, 18629671 - 18629239
Alignment:
| Q |
254 |
accgcagaaccatcaccttcagaaacacaagccctccttaaactaaaacaatctttaataaactcagacaaaatcttgtcaacatggataccaaacgtct |
353 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18629671 |
accgcacaaccatcaccttcagaaacacaagccctccttaaactaaaacaatctttaataaactcagacaaaatcttgtcaacatggataccaaacgtct |
18629572 |
T |
|
| Q |
354 |
ctccatgttccggtacgtggatcggtgttatttgcttcgacaatgtcatcacaggccttcatctctcagaccttcaactttctgggacaatagacgtcga |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18629571 |
ctccatgttccggtacgtggatcggtgttatttgcttcgacaatgtcatcacaggccttcatctctcagaccttcaactttctgggacaatagacgtcga |
18629472 |
T |
|
| Q |
454 |
cgccattgtcgagatacgtggcttaagaaccctcagtttcgtcaacaactccttcaccggtcctattccgcagttccacaaacttggcgccataaaatct |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18629471 |
cgccattgtcgagatacgtggcttaagaaccctcagtttcgtcaacaactccttcaccggtcctattccacagttccacaaacttggcgccataaaatct |
18629372 |
T |
|
| Q |
554 |
cttctcctccaacaaaaccaattctctggtcctattcctggagatttcttctcccagttaacctccttgaaaaaagtatggctttcaggtaataaattct |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
18629371 |
cttctcctccaacaaaaccaattctctggtcctattcctggagatttcttctcccagttaacctccttgaagaaagtatggctgtcaggaaataaattct |
18629272 |
T |
|
| Q |
654 |
ccggcaacattccgccttcgttaacagaacttg |
686 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
|
|
| T |
18629271 |
ctggcaacattccgccttcgttaacagaacttg |
18629239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 18629789 - 18629713
Alignment:
| Q |
133 |
ttaacctctccgaccaacggtctccaaacatcctcggcagctggcaaaacaaccaatggccactgctgccaacagca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18629789 |
ttaacctctccgaccaacggtctccaaacatcctcggcagctggcaaaacaaccaatggccactgctgccaacagca |
18629713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 18629921 - 18629893
Alignment:
| Q |
1 |
tcttctctctctccacattaccaacatcc |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18629921 |
tcttctctctctccacattaccaacatcc |
18629893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University