View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_31 (Length: 445)
Name: NF5418_high_31
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 46864180 - 46864590
Alignment:
| Q |
18 |
gatttccctattcccatttttgattattggtcttggttttatcaaacataattctgttttactgttttttgttttgttcaatcatagaaaatatgttttc |
117 |
Q |
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| T |
46864180 |
gatttcccttttcccttttttgattattggtcttggttttatcaaacataattctgttttactgttttttgttttgttcaatcatagaaaatatgttttc |
46864279 |
T |
|
| Q |
118 |
tgattttcttgttatatgatgtacaaattatagtggttggatgtatgttattttcattgctgcgtatgatattttcatgtttgttttgttattttgttca |
217 |
Q |
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| T |
46864280 |
tgattttcttgttatatgatgtacaaattatagtggttgaatgtatgttattttcattgctgcgtat------------tttgttttgttattttgttca |
46864367 |
T |
|
| Q |
218 |
tacaataaatgctgcttcagtttaaaacagtgttgtcaaatatcagaggtcaaatggcagatttgtagcaagtgccatggccaatttgtgaaggatggcg |
317 |
Q |
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| T |
46864368 |
tacaataaatgctgcttcagtttaaaacagtgttgtcaaatatcagcgttcaaatggcagatttgtagcaagcgccatggccaatttgtgaaggatggcg |
46864467 |
T |
|
| Q |
318 |
acgccatggtgttttatggtggctttaaattgcacatttggttttccaccatccatcatcgttaacactggtttaaaattaatttaccacttgtctgtat |
417 |
Q |
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| T |
46864468 |
acgccatggtgttttatggtggctttaaattgcacatttggttttccaccatccatcatcgttaacactggtttaaaattaatttaccacttgtctgtat |
46864567 |
T |
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| Q |
418 |
gattagtgattactttatctgtg |
440 |
Q |
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| T |
46864568 |
gattagtgattactttatctgtg |
46864590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 32255305 - 32255347
Alignment:
| Q |
290 |
tgccatggccaatttgtgaaggatggcgacgccatggtgtttt |
332 |
Q |
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| T |
32255305 |
tgccatggccaatttgtgatagatagcgacgccatggtgtttt |
32255347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 40416761 - 40416724
Alignment:
| Q |
302 |
tttgtgaaggatggcgacgccatggtgttttatggtgg |
339 |
Q |
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| T |
40416761 |
tttgtgaaggatggcgacgacatggcgttttatggtgg |
40416724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 30750042 - 30750090
Alignment:
| Q |
291 |
gccatggccaatttgtgaaggatggcgacgccatggtgttttatggtgg |
339 |
Q |
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|||| |||||||||||||| ||||||| ||||||||||| |||||||| |
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| T |
30750042 |
gccacggccaatttgtgaaagatggcggtgccatggtgttctatggtgg |
30750090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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