View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5418_high_36 (Length: 439)
Name: NF5418_high_36
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_36 |
 | |
|
| [»] scaffold0501 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 1903809 - 1903388
Alignment:
| Q |
1 |
atgagtcggttatgaatattagtttgcaaagatgtagagagttgcaacttcgtatagctttttggaggccaaagtggtcttagggggttttcaacacaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1903809 |
atgagtcggttatgaatattagtttgcaaagatgtagagagttgcaacttcgtatagctttttggaggccaaagtggccttagggggttttcaacacaac |
1903710 |
T |
|
| Q |
101 |
aatcatggttaacttaggggtactactctttcgaggtttgcgatttccaagttaaccatgaacattattaaggttagatctctatcatttccatcttgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1903709 |
aatcatggttaacttaggggtactactctttcgaggtttgcgatttccaagttaaccatgaacattattaaggttagatctctatcatttccatcttgca |
1903610 |
T |
|
| Q |
201 |
tggaagggtttagtctttctcatatgacaagaaatctaagtagacattcaatcatcctttcaaggtctttgaatcttcttggcataaaaacatttctcat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
1903609 |
tggaagggtttagtctttctcatatgacaagaaatctaaatagacattcaattatcctttcaagatctttgaatcttcttggcataaaaacatatctcat |
1903510 |
T |
|
| Q |
301 |
attaaacaagtagttcaattcccctcctatgtcgagcttagggaatttgacgataaagataaaagtgatcaagttttactttaactattagttaataaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1903509 |
attaaacaagtagttcaattcccctcctctgtcgagcttagggaatttgataataaagataaaagtgatcaagttttactttaactattagttaataaaa |
1903410 |
T |
|
| Q |
401 |
cttgcttaaaagaagcatgagt |
422 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
1903409 |
cttgtttaaaagaagcatgagt |
1903388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 261 - 421
Target Start/End: Complemental strand, 1879776 - 1879614
Alignment:
| Q |
261 |
caaggtctttgaatcttcttggcataaaaacatttctcatattaaacaagtagttcaattcccctcctatgtcgagcttagggaatttgacgataaagat |
360 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||| |||||||| |
|
|
| T |
1879776 |
caaggtctttatatcttcttaacattaaaacatttctcatattaaacaagtagttccgttcccctcctctgtcaagcttaaggaatttgacaataaagat |
1879677 |
T |
|
| Q |
361 |
aaaagtgatcaagttttactttaactatt--agttaataaaacttgcttaaaagaagcatgag |
421 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
1879676 |
aaaagtgatcaagttttactttaaatattagagttaataaaacttgtttaaaagaagcatgag |
1879614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 1879807 - 1879775
Alignment:
| Q |
161 |
aacattattaaggttagatctctatcatttcca |
193 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
1879807 |
aacattattaaggttagatctctaccatttcca |
1879775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 29890894 - 29890792
Alignment:
| Q |
282 |
gcataaaaacatttctcatattaaacaagtagttcaattcccctcctatgtcgagcttagggaatttgacgataaagataaaagtgatcaagttttactt |
381 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||| |||||| || | ||||||| || ||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
29890894 |
gcattaaaacatttttcatattaaacaagtagttccattcccatcatccatcgagctcagagaatttggtattaaatataaaagtgatcaagttttactt |
29890795 |
T |
|
| Q |
382 |
taa |
384 |
Q |
| |
|
||| |
|
|
| T |
29890794 |
taa |
29890792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 2389582 - 2389700
Alignment:
| Q |
11 |
tatgaatattagtttgcaaagatgtagagagttgcaacttcgtatagctttttggaggccaaagtggtcttagggggttt-tcaacacaacaatcatggt |
109 |
Q |
| |
|
||||||||| |||||||||| | || ||||||| ||||||||||||||| || ||| ||| |||||| | |||| ||| |||||||||| |||||| | |
|
|
| T |
2389582 |
tatgaatatgagtttgcaaa--tttatagagttgtaacttcgtatagcttcttagagaacaa-gtggtcctgggggttttctcaacacaaccatcatgat |
2389678 |
T |
|
| Q |
110 |
taacttaggggtactactcttt |
131 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
2389679 |
taacttagggatactactcttt |
2389700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 380
Target Start/End: Original strand, 25030385 - 25030483
Alignment:
| Q |
283 |
cataaaaacatttctcatattaaacaagtagttcaattcccctcctatgtcga-gcttagggaatttgacgataaagataaaagtgatcaagttttact |
380 |
Q |
| |
|
|||||||| || |||||||||||| |||||||| |||||| |||| | |||| | | | |||||||| | | |||||||||||||||||| ||||||| |
|
|
| T |
25030385 |
cataaaaatatctctcatattaaataagtagttacattcccatcctctctcgatgatcaaggaatttggcaacaaagataaaagtgatcaacttttact |
25030483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 11435963 - 11435862
Alignment:
| Q |
91 |
tcaacacaacaatcatggttaacttaggggtactactctttcgaggtttgcgatttccaagttaaccatg-aacattattaaggttagatctctatcatt |
189 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| | || ||||| | |||| |||||||||||||| ||| ||||||||| ||||||| | |||| |
|
|
| T |
11435963 |
tcaacacaaccttcatggcgaacttaggggtactactttctcaaggttcgtgattgccaagttaaccatgccacaatattaaggtcagatctcaaccatt |
11435864 |
T |
|
| Q |
190 |
tc |
191 |
Q |
| |
|
|| |
|
|
| T |
11435863 |
tc |
11435862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 263
Target Start/End: Original strand, 29241194 - 29241349
Alignment:
| Q |
102 |
atcatggttaacttaggggtactactctttcgaggtttgcgatttccaagttaaccatg-aacattattaaggttagatctctatcatttccatcttgca |
200 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| | | | ||| |||||||||| |||||||||||||| | ||||| | |||| || | |
|
|
| T |
29241194 |
atcatggttaacat-ggggtactactctttcgaggttcacaactaccaggttaaccatgcaacattattaaggtcatatctcaaacatt------ttcct |
29241286 |
T |
|
| Q |
201 |
tggaagggtttagtctttctcatatgacaagaaatctaagtagacattcaatcatcctttcaa |
263 |
Q |
| |
|
| ||| |||| ||||||| || |||||||||||||||| |||| |||||| || |||||||| |
|
|
| T |
29241287 |
tagaaaggttgagtctttttcctatgacaagaaatctagatagatattcaaacaacctttcaa |
29241349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 4856440 - 4856485
Alignment:
| Q |
337 |
cttagggaatttgacgataaagataaaagtgatcaagttttacttt |
382 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
4856440 |
cttaggggatttgacaataaaggtaaaagtgatcaatttttacttt |
4856485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0501 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0501
Description:
Target: scaffold0501; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 9631 - 9661
Alignment:
| Q |
354 |
taaagataaaagtgatcaagttttactttaa |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
9631 |
taaagataaaagtgatcaagttttactttaa |
9661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 5676648 - 5676697
Alignment:
| Q |
342 |
ggaatttgacgataaagataaaagtgatcaagttttactttaactattag |
391 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||||||| |||||| |||||| |
|
|
| T |
5676648 |
ggaatttgacaataaagacaaatgtgatcaagttttgctttaaatattag |
5676697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University