View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_38 (Length: 424)
Name: NF5418_high_38
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_38 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 37527846 - 37528266
Alignment:
| Q |
1 |
gtttatccgtccacggcaaagagggcaaatttttaagcgcgaggagcaagttgtacagcaacacatatgcccgcacctgaaatttaaagatagaccttag |
100 |
Q |
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| T |
37527846 |
gtttatccgtccacggcaaagagggcaattttttaagcgcgaggagcaagttgtacagcaacacatatgcccgcacctgaaatttaaagatagaccttag |
37527945 |
T |
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| Q |
101 |
ggattatgaattatattcacataaagagattgttttaagaagagaaacaaaaatagtgcatagctgggtgactgtagcagcgtagcatgctactagccta |
200 |
Q |
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| T |
37527946 |
ggattatgaattgtattcacataaagagattgttttaaga---gaaacaaaaatagtgcatagctgggtgactgtagcaacgtagcatgctactagccta |
37528042 |
T |
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| Q |
201 |
ctaccatataagcagaataaatttgaatttgtggttcaatcgcagattgaaagctacggtgagtataagcattaaactagaataagatcggtgacttacg |
300 |
Q |
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| T |
37528043 |
ctaccatataagcagaataaatttgaatttgtggttcaatcgcagattgaaagctacggtgagtataagcattaaactagaataagatcggtgacttacg |
37528142 |
T |
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| Q |
301 |
ggagaaaagcagcattgtatttctcatcaaggcatatcacacacaaatctggcaagtctccttgaccacctgctaagaagttgtcatcaatttcacctga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37528143 |
ggagaaaagcagcattgtatttctcatcaaggcatatcacacacaaatctggcaagtctccttgaccacctgctaagaagttgtcatcaatttcacctga |
37528242 |
T |
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| Q |
401 |
gaaatggtcacaaattcttacacc |
424 |
Q |
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| T |
37528243 |
gaaatggtcacaaattcttacacc |
37528266 |
T |
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