View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_40 (Length: 411)
Name: NF5418_high_40
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_40 |
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| [»] scaffold0548 (2 HSPs) |
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| [»] scaffold0522 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 11312529 - 11312364
Alignment:
| Q |
1 |
tagttttcgttaatgtgtagtaaacaaattttcttaaattgaaaagtatttccttatttatgctttttagttaatgcccaaattcattgtcgagatgtat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11312529 |
tagttttcgttaatgtgtagtaaacaaattttcttaaattgaaaagtatttccttatttatgctttttagttaatgcccaaattcattgtcgagatgtat |
11312430 |
T |
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| Q |
101 |
ttaaaggacaaatgaaattgtttctttatctaagcgttttagtgcg-agtaagatttgaaaaggaa |
165 |
Q |
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| T |
11312429 |
ttaaaggacaaatgaaattgtttctttatctaagcgttttagtgcgccgtaagatttgaaaaggaa |
11312364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 188 - 394
Target Start/End: Complemental strand, 11312306 - 11312103
Alignment:
| Q |
188 |
gaaaagggatgttaaaatgcaagaaattaattagtatagccatttgtatcgagcacatactaaaaatccgtctaagttttttcggtaaatttaaaaaaca |
287 |
Q |
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| T |
11312306 |
gaaaagggatgttaaaatgcaagaaatta----gtatagccatttgtatcgagcacatactgaaaatccgtctaagttttttcggtaaatttaaaaaaca |
11312211 |
T |
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| Q |
288 |
ttatgtaaattgtgtattcttcctttatactagtttaacnnnnnnnnnnatnnnnnnnntagataatattttagaaatta-taccaagtgattttgggtc |
386 |
Q |
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||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11312210 |
ttatgtaaattgtttattcttcctttatactagtttaacttttttttttaaaaaaaaaatagataatattttagaaattattaccaagtgattttgggtc |
11312111 |
T |
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| Q |
387 |
attagatt |
394 |
Q |
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|||||||| |
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| T |
11312110 |
attagatt |
11312103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0548 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: scaffold0548
Description:
Target: scaffold0548; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 188 - 394
Target Start/End: Original strand, 6096 - 6299
Alignment:
| Q |
188 |
gaaaagggatgttaaaatgcaagaaattaattagtatagccatttgtatcgagcacatactaaaaatccgtctaagttttttcggtaaatttaaaaaaca |
287 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| |
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| T |
6096 |
gaaaagggatgttaaaatgcaagaaatt----agtatagccatttgtatcgagcacataatgaaaatccgtataagttttttcggtaaatttaaaaaaca |
6191 |
T |
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| Q |
288 |
ttatgtaaattgtgtattcttcctttatactagtttaacnnnnnnnnnnatnnnnnnnntagataatattttagaaatta-taccaagtgattttgggtc |
386 |
Q |
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| T |
6192 |
ttatgtaaattgtttattcttcctttatactagtttaacttttttttttaaaaaaaaaatagataatattttagaaattattaccaagtgattttgggtc |
6291 |
T |
|
| Q |
387 |
attagatt |
394 |
Q |
| |
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|||||||| |
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| T |
6292 |
attagatt |
6299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0548; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 5995 - 6039
Alignment:
| Q |
122 |
ttctttatctaagcgttttagtgcg-agtaagatttgaaaaggaa |
165 |
Q |
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| T |
5995 |
ttctttatctaagggttttagtgcgccgtaagatttgaaaaggaa |
6039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 16877658 - 16877753
Alignment:
| Q |
49 |
tttccttatttatgctttttagttaatgcccaaattcattgtcgagatgtatttaaaggacaaatgaaattgtttctttatctaagcgttttagtgcgag |
148 |
Q |
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||||||||||||| |||||||||||||||||||||||||| || |||| || |||| ||||| ||||||||||||||| || | |||||||||||| |
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| T |
16877658 |
tttccttatttatactttttagttaatgcccaaattcatt---tagttgta-ttcaagggcaaataaaattgtttctttatttacgtattttagtgcgag |
16877753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 1395 - 1472
Alignment:
| Q |
49 |
tttccttatttatgctttttagttaatgcccaaattcattgtcgagatgtatttaaaggacaaatgaaattgtttctttat |
129 |
Q |
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|||| ||||||| |||||||||||| | |||||||||||| || ||||||||||||| |||| |||||||||||||| |
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| T |
1395 |
tttctttatttacgctttttagttactacccaaattcatt---gatatgtatttaaagggaaaatacaattgtttctttat |
1472 |
T |
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