View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_48 (Length: 363)
Name: NF5418_high_48
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 25550651 - 25550317
Alignment:
| Q |
20 |
tggaacatatatctttccgccatcgactaatctgaaggtggatttcaatttatgacattttatggctatatgattcgaactaatgtctgttaatgttatt |
119 |
Q |
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| T |
25550651 |
tggaacatatatctttccgccatcgactaatctgaaggtggatttcaatttatgacattttatggctatacgattcgaactaatgtatgttaatgttatt |
25550552 |
T |
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| Q |
120 |
cgttattgccctttctgatttggccatatagaaatttattttgaatgtcagaactgataaccatgtctaaaagtatgttatgcactactacttcagccta |
219 |
Q |
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| T |
25550551 |
cgttattgccctttttgatttggccatatagaaatttattttgaatgtcagaactgataaccatgtctaaaagtatgttatgcactactacttcagccta |
25550452 |
T |
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| Q |
220 |
aagtaatattgagattaatgttttttcaagttatatttgcctactataaatttttggtaatattagagaacttttgattgcgtcccttccttagtagatt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25550451 |
aagtaatattgagattaatgttttttcaagttatatttgcctactataagttcctggtaatattagagaacttttgattgtgtcccttccttagtagatt |
25550352 |
T |
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| Q |
320 |
ggattaatttaaaaaattgcgtgaatgagaataat |
354 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
25550351 |
ggattaatttaaaaaattgcgtgaatgagaataat |
25550317 |
T |
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