View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_49 (Length: 363)
Name: NF5418_high_49
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 51551822 - 51551475
Alignment:
| Q |
1 |
aggattgtattttgtggtagcaacaaagaatgcacaacctatgagaccgacgaagacaacggaagaaataactccaatgatgatccttttcctcatttgt |
100 |
Q |
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| T |
51551822 |
aggattgtattttgtggtagcaacaaagaatgcacaacctatgagaccgacgaagacaacggaagaaataactccaatgatgatccttttcctcatttgt |
51551723 |
T |
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| Q |
101 |
gctctcttctcactttttcgtcgttcattgatgaggtcgaaatcttgaaacgccatttttgaaagaaaattatttgttctaaggcagaggagtctctgcc |
200 |
Q |
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| T |
51551722 |
gctctcttctcactttttcgtcgttcattgatgaggtcgaaatcttgaaacgccatttttgaaagaaaattatttgttctaaggcagaggagtctctgcc |
51551623 |
T |
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| Q |
201 |
ttaggtataatcttcactccagtcacagg-nnnnnnnnnngatagaaatagaaaggttgtgatcaaaggagggttagtttcaactccttatgaactaatt |
299 |
Q |
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| T |
51551622 |
ttaggtataatcttcactccagtcacaggaaaaaaaagaagatagaaatagaaaggttgtgatcaaaggagggttagtttcaactccttatgaactaatt |
51551523 |
T |
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| Q |
300 |
ctgtttcatcaactgcaa-tttaatattgtttttctgcaaggagaaac |
346 |
Q |
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| T |
51551522 |
ctgtttcatcaactgcaattttaatattgtttttctgcaaggagaaac |
51551475 |
T |
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