View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5418_high_5 (Length: 648)
Name: NF5418_high_5
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 2988168 - 2988650
Alignment:
| Q |
1 |
attagtatttttcgtcttcactaatatttgaatcacgatcttttaactcttccaactctttcgatttttagataaaactaatatctctgactccgatttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2988168 |
attagtatttttcgtcttcactaatatttgaatcacgatcttttaactcttccaactctttcgatttttagataaaactaatatctctgactctgatttc |
2988267 |
T |
|
| Q |
101 |
aattataaacaaatttctactttttaactcctatcatttattaaataaatctaaaaaatctaacatttgcttataattaacccctatctttctctctgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2988268 |
aattataaacaaatttctactttttaactcctatcatttattaaataaatctaaata-tc-aacatttgcttataattaacccctatctttctctctgac |
2988365 |
T |
|
| Q |
201 |
atcaaggcaaaatgtggtatggaccaannnnnnnggccagtagctccctatctttttctgatttcacagcaaaatatgagcactccatgttactatttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2988366 |
atcaaggcaaaatgtggtatggaccaatttttttggccagtagctccctatctttttctgatttcacagcaaaatatgagcactccatgttactatttta |
2988465 |
T |
|
| Q |
301 |
tagttgcactaattactcctccttgtacctttttgtaaagtggagattcattgttttatgggataaagtggaaaatcattaaatgcacatgattacgctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2988466 |
tagttgcactaattactcctccttgtacctttttgtaaagtggagattcatttttttatgggataaagtggaaaatcattaaatgcacatgattgcgctt |
2988565 |
T |
|
| Q |
401 |
tacacagacacatacattcaaattggaaaacattaacaaaaagaagcagaatagaatcaaagtaatgagactatacgagacaatt |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2988566 |
tacacagacacatacattcaaattggaaaacattaacaaaaagaagcagaatagaatcaaagtaatgagagtatacgagacaatt |
2988650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 487 - 648
Target Start/End: Original strand, 2989180 - 2989342
Alignment:
| Q |
487 |
ttgtgagagctaatagtgattatattaaaa-agatgattgctcatatgacattttgtattgtggacactcactcactatattgtgaaatggttttatatt |
585 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2989180 |
ttgtgagagctaatagtgattaaattaaaaaagatgattgctcatatgacattttgtattgtggacactcactcactatattgtgaaatggttttatatt |
2989279 |
T |
|
| Q |
586 |
tttcatttgagtgtttatggatgtagtggatgatcattaatattatttttaatttgatatcta |
648 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2989280 |
tttcatttgagtgtttatggatgtagtggatgatcattaatattatttttaatttgatatcta |
2989342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University