View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5418_high_52 (Length: 361)
Name: NF5418_high_52
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_52 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 48887970 - 48888302
Alignment:
| Q |
19 |
gggttgagtaggtttctatttccttattcaggttgtcatagaagacattctatatctgcagggaccatacgaattttgtcaactgtgttagatattctcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48887970 |
gggttgagtaggtttctatttccttattcaggttgtcatagaagacattctatatctgcagggaccatacgaattttgtcaactgtgttagatattctcc |
48888069 |
T |
|
| Q |
119 |
agatgggagcaaattcgttacagttagctcagataggaagggtattatatatgatggaaagactgggagtaaacttggagagttttctgaagaggacggt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48888070 |
agatgggagcaaattcgttacagttagctcagataggaagggtattatatatgatggaaagactgggagtaaacttggagagttttctgaagaggacggt |
48888169 |
T |
|
| Q |
219 |
cacaagggcagcatatatgcagttagttggagtcctgacagtaaacaggtgaactccaggttgtgtttgaatgttactgttttattatgttgacattgat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48888170 |
cacaagggcagcatatatgcagttagttggagtcgtgacagtaaacaggtgaactccaggttgtgtttgaatgttactgttttattatgttgacattgat |
48888269 |
T |
|
| Q |
319 |
aaaaatttcgtcttttttcttttggccagaatt |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
48888270 |
aaaaatttcgtcttttttcttttggccagaatt |
48888302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 45097962 - 45097868
Alignment:
| Q |
90 |
aattttgtcaactgtgttagatattctccagatgggagcaaattcgttacagttagctcagataggaagggtattatatatgatggaaagactgg |
184 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| || ||||| || || ||||| || || | |||||||| |||| |||||||||||||| |
|
|
| T |
45097962 |
aattttgtcaattgtgtaagatattctccagatggcagtaaatttgtaactgttagttctgacaaaaagggtatcatattcgatggaaagactgg |
45097868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University