View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_58 (Length: 338)
Name: NF5418_high_58
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_58 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 19898030 - 19897696
Alignment:
| Q |
1 |
tctataaaataaaaaatcaactatgtcgtatgattttcttgatccataaatgttgtttcataaatattggcatgtataaaaatcaaacaagacaaaaata |
100 |
Q |
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| T |
19898030 |
tctataaaataaaaaatcaactatgtcgtatgattttcttgatccataaatgttgtttcataaatattggcatgtataaaaatcaaacaacacaaaaata |
19897931 |
T |
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| Q |
101 |
aaagctaatgtctctcacggagatataataatccaaaaagcataataattcattcactttcttttcaatttggaggtatcatacaaaaaatggagatttg |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
19897930 |
aaagttaatgtctctcacggagatataataatccaaaaagcataataattcattcactttcttttctatttggagctatcatacaaaaaatggagatttg |
19897831 |
T |
|
| Q |
201 |
gtcaaaaaatggacattttgaaataagtaaaataataaacctacgaacattttgaaatttgatatatattttgaaataagaacc--tgagactttcagca |
298 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19897830 |
gtcaaaaaatggacattttgaaataaggaaaataataaacctacgaacattttgaaatttgatatatattttgaaataagaacctttgagactttcagca |
19897731 |
T |
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| Q |
299 |
caaatttcggcggtagaactttatcctttgcttct |
333 |
Q |
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||||||||||||||| |||||||||||||| |||| |
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| T |
19897730 |
caaatttcggcggtaaaactttatcctttgattct |
19897696 |
T |
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