View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_59 (Length: 336)
Name: NF5418_high_59
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 38129161 - 38129482
Alignment:
| Q |
1 |
tatcatcacccctttgcatgaagaccaagtacaagccactgttctttgctcaaaaaccattggccttcatctccaaattagaagtggaggccatgatttt |
100 |
Q |
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| T |
38129161 |
tatcatcacccctttgcatgaagaccaagtacaagccactgttctttgctcaaaaaccattggtcttcatctcaaaattagaagtggaggtcatgatttt |
38129260 |
T |
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| Q |
101 |
gaaggtatttcatatatctctgatactccctttattatccttgatatgttcaattttcaaaacatcaccgtcgatatacaaaatgagattgctatcattc |
200 |
Q |
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| T |
38129261 |
gaaggtatttcgtatatctctgatactccctttattatccttgatatgttcaattttcaaaacatcaccgtcgatatacaaaatgagattgctatcattc |
38129360 |
T |
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| Q |
201 |
aaaccggtgcaagtctcggacaagtatattataggatatgggagaaaagtaaagttcatgactttcctgccggagtttgtccgactgtgggtgttggtgg |
300 |
Q |
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| T |
38129361 |
aaaccggtgcaagtctcggacaagtatattataggatatgggagaaaagtaaagttcatggctttcctgccggcgtttgtccaactgttggtgttggtgg |
38129460 |
T |
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| Q |
301 |
ccagttgagtggaggagagtat |
322 |
Q |
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||| ||||||||||||| |||| |
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| T |
38129461 |
ccatttgagtggaggagggtat |
38129482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 322
Target Start/End: Original strand, 38125434 - 38125529
Alignment:
| Q |
227 |
tattataggatatgggagaaaagtaaagttcatgactttcctgccggagtttgtccgactgtgggtgttggtggccagttgagtggaggagagtat |
322 |
Q |
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| T |
38125434 |
tattataggatatgggagaagagtaaagttcatggctttcctgctggggtttgtattactgttggtgttggtggtcacttgagtggtggagggtat |
38125529 |
T |
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