View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_62 (Length: 322)
Name: NF5418_high_62
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_62 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 44574768 - 44575060
Alignment:
| Q |
17 |
aatttaaactttagcagcatgagagtatgatcaagttgccttttatctagtgcctactctatccaaaaccttttcctcatcatcttgttcatctgattct |
116 |
Q |
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| T |
44574768 |
aatttaaactttagcagcatgagagtatgatcaagttgcctttcatctagtgcctactctatccaaaaccttttcctcatcatcttgttcatctgattct |
44574867 |
T |
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| Q |
117 |
cccttcacactagcaattggttgcacctcagctttctcaatttccttgccacttatcaaataatggcaagcaaagaagttgaaatagataaaattcaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44574868 |
cccttcacactagcaattggttgcacctcagctttctcaatttccttgccacttatcaaataatggcaagcaaagaagttgaaatagataaaattcaaaa |
44574967 |
T |
|
| Q |
217 |
ctccaatggaagcaattaaataataatagtaatcaagcctagtatgatttaaatcttgaccacctaaccaaggtgttttccctttatgtgatg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44574968 |
ctccaatggaagcaattaaataataatagtaatcaagcctagtatgatttaaatcttgaccacctaaccaaggtgttttccctttatgtgatg |
44575060 |
T |
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