View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_67 (Length: 297)
Name: NF5418_high_67
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_67 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 43226919 - 43226743
Alignment:
| Q |
1 |
aaatataatagaaggaaaaatgattctaatcatattgcacttaataaaaaatgatttgaatcaaaatagaataaaagtgatttttaaagttctttaaaat |
100 |
Q |
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| T |
43226919 |
aaatataatagaaggaaaaatgattctaatcatattgcacttaataaaaaatgatttgaatcaaaatagaataaaagtgatttttaaagttctttaaaat |
43226820 |
T |
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| Q |
101 |
actaacttgtttcaagccactttccacctatagtttttatgcaatagaaatatttcaaagatcattatatgatatga |
177 |
Q |
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| T |
43226819 |
actaacttgttccaagccactttccacctatagtttttatgcaatagaaatatttcaaagatcattatatgatatga |
43226743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 43226735 - 43226667
Alignment:
| Q |
210 |
actaagaaaacataactcaaaacaacttagtctaattacataaacaaaggagacttttattgagcctgt |
278 |
Q |
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| T |
43226735 |
actaagaaaacataactcaaaacaacttagtctaattacataaacaaaggagacttctattgagcctgt |
43226667 |
T |
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