View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_68 (Length: 294)
Name: NF5418_high_68
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_68 |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 71 - 277
Target Start/End: Complemental strand, 34231162 - 34230957
Alignment:
| Q |
71 |
aacaaatacgtcaaccttctcaacttttttataacgtacttaaactattttattattttaatgacatatttcgatcttattttgcggtccattcccaatc |
170 |
Q |
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| T |
34231162 |
aacaaatacgttaaccttctcaacttttttataacgtacttaaactattttattattttaatgacatattttgatcttattttgcggtccattcccaatc |
34231063 |
T |
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| Q |
171 |
ctacttcgtttgtaccactaatgccatcgatttcannnnnnnaaggaatacacatcaatcttataaatgcttttgtcttccaaactgttctcgacgatat |
270 |
Q |
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| T |
34231062 |
ctacttcgtttgtgccactaatgccatcgatttca-ttttttaaggaatacacatcaatcttataaatgcttttgtcttccaaactgttctcgacgatat |
34230964 |
T |
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| Q |
271 |
tcaaaat |
277 |
Q |
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||||||| |
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| T |
34230963 |
tcaaaat |
34230957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 127 - 275
Target Start/End: Complemental strand, 34226978 - 34226831
Alignment:
| Q |
127 |
tttaatgacatatttcgatcttattttgcggtccattcccaatcctacttcgtttgtaccactaatgccatcgatttcannnnnnnaaggaatacacatc |
226 |
Q |
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| T |
34226978 |
tttaatgatatattttgatcttattttgcgatccattcccaatcctacttcgtttgtgccactaatgccatcgatttca-ttttttaaggaatacacatc |
34226880 |
T |
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| Q |
227 |
aatcttataaatgcttttgtcttccaaactgttctcgacgatattcaaa |
275 |
Q |
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| T |
34226879 |
aatcttataaatgcatttgtcttccaaactgttctcgacgatattcaaa |
34226831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 34227046 - 34226979
Alignment:
| Q |
12 |
agagacaaagatgtaagcatgatggcaatgaaagctaaacaaacgattttgcgatctttaacaaatac |
79 |
Q |
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| T |
34227046 |
agagaaaaagatgtaagcatgatggcaatgaaagttaaacaaacgattttgcggtctttaccaaatac |
34226979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 267
Target Start/End: Original strand, 33929 - 34099
Alignment:
| Q |
97 |
ttttataacgtacttaaactattttattattttaatgacatatttcgatcttattttgcggtccattcccaatcctacttcgtttgtaccactaatgcca |
196 |
Q |
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| T |
33929 |
ttttataacttacttaaactattttattattttattgacatcttttaatcatattttgcggtccattcccaatcctacgtcgtttgtgccactaatgcca |
34028 |
T |
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| Q |
197 |
tcgatttcannnnnnnaaggaatacacatcaatcttataaatgcttttgtcttccaaactgttctcgacga |
267 |
Q |
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| T |
34029 |
tcaatttcatttctataaggattacacatcaatcttataattgcatttgtcatcaaaacagttctcgacga |
34099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 5986601 - 5986459
Alignment:
| Q |
12 |
agagacaaagatgtaagcatgatggcaatgaaagctaaacaaacgattttgcgatctttaacaaatacgtcaaccttctcaact-tttttataacgt-ac |
109 |
Q |
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| T |
5986601 |
agagataaagaggtaatcacgatggaaatgaaagttgaacaaatgattttgcggtctttaccaaatactccaaccttttcgactatttttataacattac |
5986502 |
T |
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| Q |
110 |
ttaaactattttattattttaatgacatatttcgatcttattt |
152 |
Q |
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| T |
5986501 |
ttaaactatttaactattttaatgacatcttttgatcctattt |
5986459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 27878762 - 27878659
Alignment:
| Q |
49 |
aacaaacgattttgcgatctttaacaaatacgtcaaccttctcaact-tttttataacgt-acttaaactattttattattttaatgacatatttcgatc |
146 |
Q |
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|||||| ||||||||| |||||| ||||| || ||||||| || ||| |||||||||| | ||||||||||||| | ||| |||||||||| ||| |||| |
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| T |
27878762 |
aacaaatgattttgcggtctttaccaaatgcgccaaccttttcgactatttttataacattacttaaactatttaactatattaatgacatcttttgatc |
27878663 |
T |
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| Q |
147 |
ttat |
150 |
Q |
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|||| |
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| T |
27878662 |
ttat |
27878659 |
T |
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