View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_72 (Length: 285)
Name: NF5418_high_72
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_72 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 336505 - 336235
Alignment:
| Q |
1 |
atggacaagtcctcttcatcagagtcctcaatattttgagcctttttgtgtttagtttcttcataacaaccaagtgaaggtgtatgtgattgtgaggtat |
100 |
Q |
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| T |
336505 |
atggacaagtcctcttcatcagagtcctcaatattttgagcctttttgtgtttagtttcttcataacaaccaagtgaaggtgtatgtgattgtgaggtat |
336406 |
T |
|
| Q |
101 |
tgagagaacggtcaaggtatagagtccatccagactcacacccactgctgcattctgaagctaatgtatccatatgatcttgttttggagtaactgggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336405 |
tgagagaacggtcaaggtatagagtccatccagactcacacccactgctgcattctgaagctaatgtatccatatgatcttgttttggagtaactgggat |
336306 |
T |
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| Q |
201 |
aggactctccaatttatgatgaaatgaaagagttacggtaaaaaagagttaactatat-aattaactaact |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
336305 |
aggactctccaatttatgatgaaatgaaagagttacggtaaaaaagagttaactatataaattaactaact |
336235 |
T |
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