View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_high_77 (Length: 279)

Name: NF5418_high_77
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_high_77
NF5418_high_77
[»] chr4 (1 HSPs)
chr4 (19-272)||(33370225-33370481)
[»] chr5 (1 HSPs)
chr5 (19-272)||(32943833-32944090)
[»] chr7 (2 HSPs)
chr7 (19-272)||(32548021-32548277)
chr7 (19-103)||(35770733-35770817)
[»] chr3 (2 HSPs)
chr3 (19-95)||(49288180-49288256)
chr3 (125-161)||(49085913-49085949)
[»] chr2 (4 HSPs)
chr2 (72-161)||(26893720-26893806)
chr2 (72-161)||(26899159-26899245)
chr2 (19-69)||(4385738-4385788)
chr2 (72-120)||(6852190-6852238)
[»] chr8 (1 HSPs)
chr8 (19-56)||(36248-36285)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 33370481 - 33370225
Alignment:
Q  19 attcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttaaagaaattgaatgtgtgggaaatttggagtga 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33370481 attcttttcacttgaatctcacaataaaagaaggtaaaataaggtaatttgatttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtga 33370382  T
Q  119 tgatgagtttgaaaggattttgaggaatatgctttatgtgatgtgatgatga---ttgttgttgtttcttgattgaaaattatatgcattcttctctctc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||| ||||||||||||||||    
T  33370381 tgatgagtttgaaaggattttgaggaatatgctttatgtgatgtgatgatgaatgttgttgttgtttcatgattgaaaattatctgcattcttctctctc 33370282  T
Q  216 attattttttattttccagattaaataaataaataaaaatttggatctcctatgcta 272  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  33370281 attatttttcattttccagattaaaaaaataaataaaaatttggatctcctaggcta 33370225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 32944090 - 32943833
Alignment:
Q  19 attcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttaaagaaattgaatgtgtgggaaatttggagtga 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  32944090 attcttttcacttgaatctcacaataaaagaaggtaaaataaggtaatttgatttgttatgggagttgaagaaattgaatgggtgggaaatttggagtga 32943991  T
Q  119 tgatgagtttgaaagga-ttttgaggaatatgctttatgtgatgtgatgatga---ttgttgttgtttcttgattgaaaattatatgcattcttctctct 214  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||| |||||||||||||||    
T  32943990 tgatgagtttgaaaggatttttgaggaatatgctttatgtgatgtgatgatgaatgttgttgttgtttcatgattgaaaattatctgcattcttctctct 32943891  T
Q  215 cattattttttattttccagattaaataaataaataaaaatttggatctcctatgcta 272  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  32943890 cattatttttcattttccagattaaaaaaataaataaaaatttggatctcctaggcta 32943833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 32548277 - 32548021
Alignment:
Q  19 attcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttaaagaaattgaatgtgtgggaaatttggagtga 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32548277 attcttttaacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtga 32548178  T
Q  119 tgatgagtttgaaaggattttgaggaatatgctttatgtgatgtgatgatg---attgttgttgtttcttgattgaaaattatatgcattcttctctctc 215  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    |||||||||||||||||||||||||||| |||||||||||||||     
T  32548177 tgatgagtttgaaaggattttgaggaatatgctttatgtggtgtgatgatgtatgttgttgttgtttcttgattgaaaattatctgcattcttctctcta 32548078  T
Q  216 attattttttattttccagattaaataaataaataaaaatttggatctcctatgcta 272  Q
    ||||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  32548077 attatttttcattttccagattaaagaaataattaaaaatttggatctcctaggcta 32548021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 35770733 - 35770817
Alignment:
Q  19 attcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttaaagaaattgaatgtgtg 103  Q
    |||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||| |||||| |||||||    
T  35770733 attcttctcacttgaatctcacgataatagaaggtaaaataaggtaatttgatttgttatgggaattaaataaattggatgtgtg 35770817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 49288256 - 49288180
Alignment:
Q  19 attcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttaaagaaattg 95  Q
    |||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| || || ||||||    
T  49288256 attcttctcacttgaatctcacgataatagaaggtaaaataaggtaatttgatttgttatgggaattgaataaattg 49288180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 49085949 - 49085913
Alignment:
Q  125 gtttgaaaggattttgaggaatatgctttatgtgatg 161  Q
    ||||||||||||||||||||||| |||||||||||||    
T  49085949 gtttgaaaggattttgaggaataagctttatgtgatg 49085913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 26893806 - 26893720
Alignment:
Q  72 ttgttatgggagttaaagaaattgaatgtgtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtgatg 161  Q
    ||||||||||| || ||||||||||||||||  ||||||||||||   |||| || ||||| ||| ||||||||||||||| || |||||    
T  26893806 ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagt---gatgggtatgaaaagatattgaggaatatgcttcatatgatg 26893720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 26899245 - 26899159
Alignment:
Q  72 ttgttatgggagttaaagaaattgaatgtgtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtgatg 161  Q
    ||||||||||| || ||||||||||||||||  ||||||||||||   |||| || ||||| ||| ||||||||||||||| || |||||    
T  26899245 ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagt---gatgggtatgaaaagatattgaggaatatgcttcatatgatg 26899159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 4385738 - 4385788
Alignment:
Q  19 attcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttg 69  Q
    |||||| |||| |||||||||| |||| ||||||||||| |||||||||||    
T  4385738 attcttctcacatgaatctcacgataatagaaggtaaaataaggtaatttg 4385788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 6852238 - 6852190
Alignment:
Q  72 ttgttatgggagttaaagaaattgaatgtgtgggaaatttggagtgatg 120  Q
    ||||||||||| || ||||||||||||||||  ||||||||||| ||||    
T  6852238 ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagcgatg 6852190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 36248 - 36285
Alignment:
Q  19 attcttttcacttgaatctcacaataaaagaaggtaaa 56  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  36248 attcttgtcactttaatctcacaataaaagaaggtaaa 36285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University