View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_95 (Length: 250)
Name: NF5418_high_95
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_95 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 5241233 - 5241001
Alignment:
| Q |
9 |
gattattctctgcaattgaatacatatgataacttgataacttaggtttaaaaataaaacacaggatcatttaagaaggttatggtcactagtgatttta |
108 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5241233 |
gattcttctctgcaattgaatacatatgataactt--------aggtttaaaaataaaacacaagatcatttaagaaggttatggtcactagtgatttta |
5241142 |
T |
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| Q |
109 |
tgtatgaaagtttcaccaatannnnnnnngttaactagtttagtgaccaagatttcactccttaagataaataagtgaaaaaccgtgggtttaaatttca |
208 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5241141 |
tgtatgaaagtttcactaatatttttttt-ttaactagtttagtgaccaagatttcactccttaagataaataagtgaaaaaccgtgggtttaaatttca |
5241043 |
T |
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| Q |
209 |
acctttgcatattgtaatggatctaccaacagagatatacgt |
250 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5241042 |
acctttgcgtattgtaatggatctaccaacagagatatacgt |
5241001 |
T |
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