View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_96 (Length: 248)
Name: NF5418_high_96
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_96 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 13466844 - 13466615
Alignment:
| Q |
19 |
gtagtacattgaagctagctacctattaagtaaattaacactagaaccgttacttaagagtattagccacatcaatgacaaatcggtatttaacatcatt |
118 |
Q |
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| T |
13466844 |
gtagtacattgaagctagctacctattaagtaaattaacactagaaccgttacttaagagtattagccacatcaatgacaaatcggtatttaacatcatt |
13466745 |
T |
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| Q |
119 |
ctttgcaagtctctcaaaagcagtgttcacataatccattgaaatcacttcaatatctgctgtgatattgtgcttagctgcaaaatcaatcatgtcttgg |
218 |
Q |
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| T |
13466744 |
ctttgcaagtctctcaaaagcagtgttcacataatccattgaaatcacttcaatatctgctgtaatattgtgctttgctgcaaaatcaatcatgtcttgg |
13466645 |
T |
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| Q |
219 |
ctctctttcattcctccaccagcactacct |
248 |
Q |
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| T |
13466644 |
ctctctttcattcctcccccagcactacct |
13466615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 13394427 - 13394332
Alignment:
| Q |
141 |
gtgttcacataatccattgaaatcacttcaatatctgctgtgatattgtgcttagctgcaaaatcaatcatgtcttggctctctttcattcctcca |
236 |
Q |
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| T |
13394427 |
gtgttaacataatccactggtatgacttcgatgtctggttttatattgtgtttagcagcaaaatcaatcatttcttgtgtctctttcatgcctcca |
13394332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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