View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_high_99 (Length: 246)
Name: NF5418_high_99
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_high_99 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 41488654 - 41488838
Alignment:
| Q |
7 |
agaataactattagctagaagttctatatatttatatattgatgctctatataccagttcaatcctctaaagttcttcaaagatttatttctctaaaatt |
106 |
Q |
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| T |
41488654 |
agaataactattagctagaagttctatatatttatatattgacgctctatataccagttcaatcctctaaagttcttcaaagatttatttctct-aaatt |
41488752 |
T |
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| Q |
107 |
tatgtggcagactggcagtaattatcttaaattttgcttatttgcatgattttagtcatctagtatttcttctgtacatttcccca |
192 |
Q |
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| T |
41488753 |
tctgtggcagactggcagtaattatcttaaattttgcttatttgcatgattttagtcatctagtatttcttctgtacattttccca |
41488838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 41486764 - 41486827
Alignment:
| Q |
16 |
attagctagaagttctatatatttatatattgatgctctatataccagttcaatcctctaaagt |
79 |
Q |
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| T |
41486764 |
attagctggaagttttatatatttatatcttgatgctctgtgtaccagttcaatcctctaaagt |
41486827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 41486848 - 41486902
Alignment:
| Q |
122 |
cagtaattatcttaaattttgcttatttgcatgattttagtcatctagtatttct |
176 |
Q |
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| T |
41486848 |
cagtgattatcttaagttttccttatttgcatgattttagacatttaatatttct |
41486902 |
T |
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