View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_10 (Length: 564)
Name: NF5418_low_10
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 44 - 548
Target Start/End: Complemental strand, 2095173 - 2094676
Alignment:
| Q |
44 |
atatatatatgatgctacaagaacaatcatacgtatatgcgttagaattattgtgtctttagcatataaataatcacatatgataattataaggaatgat |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2095173 |
atatatatatgatgctacaagaacaatcatacgtatatgcattagaattattgtgtctttagcatataaataatcacatatgataattataaggaatgat |
2095074 |
T |
|
| Q |
144 |
gagaagaatttcactatattatagtcttaaggagcttccctttctaaaattcatttttgcatcatcaacgttattgtatttttcctgtatgctattcaat |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2095073 |
gagaagaatttcactatattatagtcttaaggagcttccctttctaaaattgatttttgcatcatcaacgttattgtatttttccggtatgctattcaat |
2094974 |
T |
|
| Q |
244 |
aaagtatgttaaatctttctctcaacgttaacccgtttaaccaaggctcctttcnnnnnnnnnnnnnngtgtccctaccaatcccaccttcatccttaaa |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
2094973 |
aaagtatgttaaatctttctctcaacgttaacccgtttaaccaaggctcctttc------aaaaaaaagtgtccctaccatccccaccttcatccttaaa |
2094880 |
T |
|
| Q |
344 |
ctaatgaaaaccaatttaaggaatgatccactaaccctttatttaaactccaaatatctccccaagtaaccccatatttgtcttgaaggactctcaccca |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
2094879 |
ctaatgaaaaccaatttaaggaatgatccactaaccctttatttaaactccaaatatct-cccaagtatccccatatttgtcttgaaggactctcaccca |
2094781 |
T |
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| Q |
444 |
taacccactattgatctattttcatcctccacaaccatatttgcttagtaaagcaaaattaaaagctttgatgttcctaatgtctaaccctccatccttc |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2094780 |
taacccactattgatctattttcatcctccacaaccatatttgcatagtaaagcaaaattaaaagctttgatgttcctaatgtctaaccctccatccttc |
2094681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2095280 - 2095228
Alignment:
| Q |
1 |
attacactagaggcatttttaggtgtttgattgatgtatatgaatatatatat |
53 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2095280 |
attacactagaggcatttttaggtgtttgattgatgtatatgtatatatatat |
2095228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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