View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_102 (Length: 244)
Name: NF5418_low_102
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_102 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 34865449 - 34865665
Alignment:
| Q |
10 |
tcgaagaatatcaaatggattcaaattcatggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatcatccatcatcaca |
109 |
Q |
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| T |
34865449 |
tcgaagaacatcaaatggattcaaattcttggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatcatccatcatcaca |
34865548 |
T |
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| Q |
110 |
cactttttcttcaagtctccgtcaccagtccctgctgccactctgcccgttcttttcttttataataatttatatttatatataaggaatccgtgagata |
209 |
Q |
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| T |
34865549 |
cactttttcttcaagtctccgtcaccagtccctgctgccactctgcccgttcttttcttttataataatttatatttatatataaggaatccatgagata |
34865648 |
T |
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| Q |
210 |
tttttgcgtaacattga |
226 |
Q |
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||||||||||||||||| |
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| T |
34865649 |
tttttgcgtaacattga |
34865665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 51858077 - 51857927
Alignment:
| Q |
39 |
tggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatcatccatcatcacacactttttcttcaagtctccgtcaccagt |
138 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||| |||||||||||| |||||||||||||||| || | || |
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| T |
51858077 |
tggatataataactaaccataagtctcgaggaagatttagccaatcaaccgtgtcatcatctatcatcacacacactttcttcaagtctccg-catctgt |
51857979 |
T |
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| Q |
139 |
ccctgctgccactctgcccgttcttttc--ttttataataatttatatttat |
188 |
Q |
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| T |
51857978 |
tcctgctgctactctgcccattcttttcttttttttgataatttatatttat |
51857927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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