View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5418_low_105 (Length: 240)
Name: NF5418_low_105
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_105 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32526740 - 32526519
Alignment:
| Q |
1 |
taattgcaacttctttgttgctctccaagttgtctttggaaatggcttcctgctttgctttccaaatggacaagccttgcaatttgaaatatggtcatca |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
32526740 |
taattgcaacttcattgttgctctccaagttgtctttggaaatggcttcctgctttgctttccaaactgacaagccttgcaatttgaaatatggccatca |
32526641 |
T |
|
| Q |
101 |
agttctggaatgtcatttgccatctccttggatttcaattgcagcaaaccttgatgatgataatgcccgagccttttgtgtcataagtctgtgacatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |
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|
| T |
32526640 |
agttctggaatgtcatttgccatctccttggatttcaattgcagcaaaccttgatgatgataatgcccgagccttttgtgccataagtctctaacatttt |
32526541 |
T |
|
| Q |
201 |
ctttcatttgaaaagcaatttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
32526540 |
ctttcatttgaaaagcaatttg |
32526519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28391136 - 28390915
Alignment:
| Q |
1 |
taattgcaacttctttgttgctctccaagttgtctttggaaatggcttcctgctttgctttccaaatggacaagccttgcaatttgaaatatggtcatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
28391136 |
taattgcaacttctttgttgctctccaagttgtctttggaaatggcttcctgccttgctttccaaactgacaagccttgcaatttgaaatatggtcatca |
28391037 |
T |
|
| Q |
101 |
agttctggaatgtcatttgccatctccttggatttcaattgcagcaaaccttgatgatgataatgcccgagccttttgtgtcataagtctgtgacatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
28391036 |
agttctggaatgtcatttgccatctccttgaatttcaattgcagcaaaccttgatgatgataatgcccgagccttttgtgccataagtttgtgacatttt |
28390937 |
T |
|
| Q |
201 |
ctttcatttgaaaagcaatttg |
222 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
28390936 |
ctttcatttgaaaagaaatttg |
28390915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6837839 - 6838060
Alignment:
| Q |
1 |
taattgcaacttctttgttgctctccaagttgtctttggaaatggcttcctgctttgctttccaaatggacaagccttgcaatttgaaatatggtcatca |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
6837839 |
taattgcaacttttttgttgctctccaagttgtctttggaaatggcttcctgctttgctttccaaacttacaagtcttgcaatttgaaatatggtcatca |
6837938 |
T |
|
| Q |
101 |
agttctggaatgtcatttgccatctccttggatttcaattgcagcaaaccttgatgatgataatgcccgagccttttgtgtcataagtctgtgacatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||| |
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|
| T |
6837939 |
agttctggaatgtcatttgccatctccttggatttcaattgcagcaaaccttgatgattataatgcccgagccttttgtgccataagtttgtgatatttt |
6838038 |
T |
|
| Q |
201 |
ctttcatttgaaaagcaatttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6838039 |
ctttcatttgaaaagcaatttg |
6838060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8976399 - 8976620
Alignment:
| Q |
1 |
taattgcaacttctttgttgctctccaagttgtctttggaaatggcttcctgctttgctttccaaatggacaagccttgcaatttgaaatatggtcatca |
100 |
Q |
| |
|
||||||||| ||| |||||||| |||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
8976399 |
taattgcaatttcattgttgctttccatgttgtctttggaaatggcttcctatttttctttccaaactaacaagccttgcaatttgaaatatggtcatca |
8976498 |
T |
|
| Q |
101 |
agttctggaatgtcatttgccatctccttggatttcaattgcagcaaaccttgatgatgataatgcccgagccttttgtgtcataagtctgtgacatttt |
200 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||| || |||||||||||| || |||| ||||||||||| |
|
|
| T |
8976499 |
agttcttgaatggcatttgccatctccttggatttcaattggagcaggccttgatgatgataattcctgagccttttgtgccacaagtatgtgacatttt |
8976598 |
T |
|
| Q |
201 |
ctttcatttgaaaagcaatttg |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
8976599 |
ctttcatttgaaaagcagtttg |
8976620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 28599644 - 28599852
Alignment:
| Q |
1 |
taattgcaacttctttgttgctctccaagttgtctttggaaatggcttcctgctttgctttccaaatggacaagccttgcaatttgaaatatggtcatca |
100 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
28599644 |
taatttcaacttctttgttgctctccatgttgtctttggaaatggcttcctacattgctttccaaactgacaagccttgcaatttgaaatatggtcacca |
28599743 |
T |
|
| Q |
101 |
agttctggaatgtcatttgccatctccttggatttcaattgcagcaaaccttgatgatgataatgcccgagccttttgtgtcataagtctgtgacatttt |
200 |
Q |
| |
|
|||||||||| ||| |||| ||| ||||||||||| | |||||||| || ||||||||||| || | |||||||||||| || || ||||| ||||||| |
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|
| T |
28599744 |
agttctggaaggtcgtttgtcatatccttggattttagttgcagcaggccctgatgatgatattgtctgagccttttgtgccacaaatctgttacatttt |
28599843 |
T |
|
| Q |
201 |
ctttcattt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
28599844 |
ctttcattt |
28599852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6385810 - 6385592
Alignment:
| Q |
1 |
taattgcaacttctttgttgctctccaagttgtctttggaaatggcttcctgctttgctttccaaatggacaagccttgcaatttgaaatatggtcatca |
100 |
Q |
| |
|
||||| || ||||||||||| ||| || |||||||||| ||| |||| || |||| ||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
6385810 |
taattacagcttctttgttgttctgcatgttgtctttgaaaacagctttatgatttgttttccaaattaacaagccttgcaatttgaaacatggtcatca |
6385711 |
T |
|
| Q |
101 |
agttctggaatgtcatttgccatctccttggatttcaattgcagcaaaccttgatgatgataatgcccgagccttttgtgtcataagtctgtgacatttt |
200 |
Q |
| |
|
|||| || || ||||||| ||||||| |||||| || |||| | ||| ||||||||||| |||| |||||||| || || || ||||||||||||| |
|
|
| T |
6385710 |
agttatgcaaggtcattttccatctc---ggattttaactgcattatccctggatgatgataacgcccaagccttttatgccacaaatctgtgacatttt |
6385614 |
T |
|
| Q |
201 |
ctttcatttgaaaagcaatttg |
222 |
Q |
| |
|
|||||||||| ||| ||||||| |
|
|
| T |
6385613 |
ctttcatttgtaaaccaatttg |
6385592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 20082378 - 20082590
Alignment:
| Q |
4 |
ttgcaacttctttgttgctctccaagttgtctttggaaatggcttcctgctttgctttccaaatggacaagccttgcaatttgaaatatggtcatcaagt |
103 |
Q |
| |
|
||||||||| |||||| ||||||| ||||||||| ||||||||||| | ||||| |||||||| ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
20082378 |
ttgcaacttttttgtttctctccatgttgtctttcgaaatggcttctttctttgatttccaaactaacaagccttgcaatttgaaatattgtcattaagt |
20082477 |
T |
|
| Q |
104 |
tctggaatgtcatttgccatctccttggatttcaattgcagcaaaccttgatgatgataatgcccgagcc-ttttgtgtcataagtctgtgacattttct |
202 |
Q |
| |
|
| |||||||||||||| ||||| ||| ||||| || ||||| | ||||| | |||||||||| |||||| || ||| || |||||| | ||||||||| |
|
|
| T |
20082478 |
t-tggaatgtcatttggcatctgcttagattttaactgcagtaggccttggtaatgataatgctcgagccaattagtgccacaagtctatcacattttct |
20082576 |
T |
|
| Q |
203 |
ttcatttgaaaagc |
216 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
20082577 |
ttaatttgaaaagc |
20082590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 13812796 - 13812579
Alignment:
| Q |
5 |
tgcaacttctttgttgctctccaagttgtctttggaaatggcttcctgctttgctttccaaatggacaagccttgcaatttgaaatatggtcatcaagtt |
104 |
Q |
| |
|
||||||| ||||||| || |||| |||| ||||||| |||||||| || ||||||| ||| |||||| ||| | |||| | ||||||||||||||| |
|
|
| T |
13812796 |
tgcaactcctttgttactatccatgttgcctttggatatggcttcgtgggttgcttttcaatctaacaagctttggagtttgcagtatggtcatcaagtt |
13812697 |
T |
|
| Q |
105 |
ctggaatgtcatttgccatctccttggatttcaattgcagcaaaccttgatgatgataatgcccgagccttttgtgtcataagtctgtgacattttcttt |
204 |
Q |
| |
|
||||| ||||||||| || |||||||||| || || |||| ||| |||||||||||||| | || ||| ||||| || |||||||||||||||||||| |
|
|
| T |
13812696 |
atggaagatcatttgccttcaccttggattttaactgtagcagaccctgatgatgataatgtctgatcctattgtgccacaagtctgtgacattttcttt |
13812597 |
T |
|
| Q |
205 |
catttgaaaagcaatttg |
222 |
Q |
| |
|
|||||| ||| ||||||| |
|
|
| T |
13812596 |
catttggaaaacaatttg |
13812579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 2803671 - 2803564
Alignment:
| Q |
116 |
tttgccatctccttggatttcaattgcagcaaaccttgatgatgataatgcccgagccttttgtgtcataagtctgtgacattttctttcatttgaaaag |
215 |
Q |
| |
|
|||||||||||||||||||| | ||| |||| || ||||||||||||| |||| |||||||| || || | ||| ||||||||||||||||||||| |
|
|
| T |
2803671 |
tttgccatctccttggattttagttgtagcaggccctgatgatgataattatcgagtcttttgtgccacaaatttgttacattttctttcatttgaaaaa |
2803572 |
T |
|
| Q |
216 |
caatttgt |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
2803571 |
caatttgt |
2803564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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