View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_106 (Length: 240)
Name: NF5418_low_106
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_106 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 10011391 - 10011179
Alignment:
| Q |
1 |
tgtccaaatccaagctctgtggtggtgttctannnnnnnactgatatgaatttgatgtccaactcttctaaatcatttatgtctcccttcgaaaaaggaa |
100 |
Q |
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| T |
10011391 |
tgtccaaatccaagctctgtggtggtgttctatttttttactgatatgaatttgatgtccaactcttctaaatcatttatgtctcccttcgaaaaaggaa |
10011292 |
T |
|
| Q |
101 |
agaaaaataactcttctgcttcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaannnnnnnatgtccaattctccaaaacaggagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10011291 |
agaaaaataactcttctgcttcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagca |
10011192 |
T |
|
| Q |
201 |
cctctcttctata |
213 |
Q |
| |
|
||||||||||||| |
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|
| T |
10011191 |
cctctcttctata |
10011179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 561652 - 561565
Alignment:
| Q |
121 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaannnnnnnatgtccaattctccaaaacaggagcacctctctt |
208 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
561652 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaaggaaaaaatttgatgtccaattctccaaaacaggaacacctctctt |
561565 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 17688782 - 17688868
Alignment:
| Q |
121 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaannnnnnnatgtccaattctccaaaacaggagcacctctctt |
208 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| ||| ||| ||||| ||||||||||||||||| |||||||||| |
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| T |
17688782 |
tcagaaacgagaaagaatatagaagaaaaggacaattttaaag-aaaaaatttgatgtctaattctccaaaacaggaacacctctctt |
17688868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 1678954 - 1678868
Alignment:
| Q |
121 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaannnnnnnatgtccaattctccaaaacaggagcacctctctt |
208 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| || |||| ||||| ||||||||||||||||| |||||||||| |
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| T |
1678954 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaa-gaaaaaatttgatgtctaattctccaaaacaggaacacctctctt |
1678868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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