View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_107 (Length: 239)
Name: NF5418_low_107
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_107 |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 33321856 - 33321751
Alignment:
| Q |
118 |
gtattagtcatgtatggtttgttgtttatgaaattgatagcttctaccctttagcatcctaaccaaaagccaaggagaaacattgttgaacaactcaata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33321856 |
gtattagtcatgtatggtttgttgtttatgaaattgatagcttctaccc-ttagcatcctaaccaaatgccaaggagaaacattgttgaacaactcaata |
33321758 |
T |
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| Q |
218 |
aggtaat |
224 |
Q |
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| ||||| |
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| T |
33321757 |
acgtaat |
33321751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 33321969 - 33321876
Alignment:
| Q |
1 |
actccgtcgatgaattcaagtaaaaatatgttttcaaatgggtatttatatgaattaggaataacagaaaacaattcaaacgtaggaattaggc |
94 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33321969 |
actccgtcgatgaattcaaataaaaatatgttttcaaatgggtatttatatgaattaggaataacagaaaacaattcaaacgtaggaattaggc |
33321876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 29595297 - 29595402
Alignment:
| Q |
118 |
gtattagtcatgtatggtttgttgtttatgaaattgatagcttctaccctttagcatcctaaccaaaagccaaggagaaacattgttgaacaactcaata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29595297 |
gtattagtcatgtatggtttgttgtttatgaaattgatagcttctaccc-ttagtatcctaaccaaaagccaaggagaaacattgttgaacaactcaata |
29595395 |
T |
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| Q |
218 |
aggtaat |
224 |
Q |
| |
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| ||||| |
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| T |
29595396 |
acgtaat |
29595402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 29595190 - 29595283
Alignment:
| Q |
1 |
actccgtcgatgaattcaagtaaaaatatgttttcaaatgggtatttatatgaattaggaataacagaaaacaattcaaacgtaggaattaggc |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |
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| T |
29595190 |
actccgtcgatgaattcaagtaaaaatatgttttcaaatgagtatttatatgaaataggaataagagaaaacaattcaaacgtaggatttaggc |
29595283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 3315373 - 3315279
Alignment:
| Q |
130 |
tatggtttgttgtttatgaaattgatagcttctaccctttagcatcctaacc-aaaagccaaggagaaacattgttgaacaactcaataaggtaat |
224 |
Q |
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|||| |||||||||||||||||||||| ||||| || |||| || ||||| |||||| ||||||||||||||||||| |||||||||| ||||| |
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| T |
3315373 |
tatgttttgttgtttatgaaattgatatcttct-gccggtagcttcgtaaccaaaaagctaaggagaaacattgttgaataactcaataacgtaat |
3315279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 11938201 - 11938145
Alignment:
| Q |
10 |
atgaattcaagtaaaaatatgttttcaaatgggtatttatatgaattaggaataaca |
66 |
Q |
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||||||||||||| ||| || ||||||||| ||||||||| |||||| |||||||| |
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| T |
11938201 |
atgaattcaagtaggaatttgatttcaaatgagtatttataggaattaagaataaca |
11938145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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