View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_108 (Length: 239)
Name: NF5418_low_108
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_108 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 16402633 - 16402850
Alignment:
| Q |
1 |
ttgggagacttcatttcttccccatgacaaccacaaatggttcagtttcttccttgaaatattggcttttttggcatctgctacacttttaactctctct |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16402633 |
ttgggagacttcatttctttcccatgacaaccacaaatggttcagtttcttccttgaaatattggcttttttggcatctgctacactcttaactctctct |
16402732 |
T |
|
| Q |
101 |
aaattcttgatgtgcaactgtcctttaaggttaagttgtcccagttcttccaaaaggaacccccttttcttgccaacaatgtatttgcttaaagtcttta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16402733 |
aaattcttgatgtgcaactgtcctttaaggttaagttgtcccagttcttccaaaaggaacccccttttgttgccaacaatgtatttgcttaaagtcttta |
16402832 |
T |
|
| Q |
201 |
gggaattcagctttccta |
218 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
16402833 |
gggaattcagctttccta |
16402850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 16396041 - 16396245
Alignment:
| Q |
1 |
ttgggagacttcatttcttccccatgacaaccacaaatggttcagtttcttccttgaaatattggcttttttggcatctgctacacttttaactctctct |
100 |
Q |
| |
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||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||| | ||||||| |
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| T |
16396041 |
ttgggagacttcatttctttcccatgacagccacaattggttcagtttcttccttgacatattggcttttttggcatctgttacactttttagtctctct |
16396140 |
T |
|
| Q |
101 |
aaattcttgatgtgcaactgtcctttaaggttaagttgtcccagttcttccaaaaggaacccccttttcttgccaacaatgtatttgcttaaagtcttta |
200 |
Q |
| |
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|| ||||||||||| ||||| |||||||| ||||| ||||||| |||||||||||| || || |||| | |||||||| |||||||||||||| |||| |
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| T |
16396141 |
aagttcttgatgtgtaactgccctttaagattaagctgtcccaattcttccaaaagaaatcctctttcttctccaacaatatatttgcttaaagtattta |
16396240 |
T |
|
| Q |
201 |
gggaa |
205 |
Q |
| |
|
||||| |
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|
| T |
16396241 |
gggaa |
16396245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 15454165 - 15453952
Alignment:
| Q |
9 |
cttcatttcttccccatgacaaccacaaatggttcagtttcttccttgaaatattggcttttttggcatctgctacacttttaactctctctaaattctt |
108 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
15454165 |
cttcatttctttcccatgacagccacaattggttcaatttcttccttgacatattggcttttttggcatctgttacactttttactctctctaggttctt |
15454066 |
T |
|
| Q |
109 |
gatgtgcaactgtcctttaaggttaagttgtcccagttcttccaaaaggaacccccttttcttgccaacaatgtatttgcttaaagtctttagggaattc |
208 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| ||||||||| || || ||| |||||||||||||||||||||||||||||||||||| | |
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| T |
15454065 |
gatgtgtaactcacctttaaggttaagttgtcccaattcttccaatttaaatcctttttcattgccaacaatgtatttgcttaaagtctttagggaagtt |
15453966 |
T |
|
| Q |
209 |
agctttcctatatg |
222 |
Q |
| |
|
| ||| |||||||| |
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| T |
15453965 |
aacttccctatatg |
15453952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 17926978 - 17927188
Alignment:
| Q |
9 |
cttcatttcttccccatgacaaccacaaatggttcagtttcttccttgaaatattggcttttttggcatctgctacacttttaactctctctaaattctt |
108 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||||||| | || || || |||||||||| |||||||| || ||||||||| |||||||||| | ||| |
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|
| T |
17926978 |
cttcatttctcccccatgacaacctcaattggttcaagtgtttactggacatattggcttctttggcatgtgttacactttttactctctctaggtgctt |
17927077 |
T |
|
| Q |
109 |
gatgtgcaactgtcctttaaggttaagttgtcccagttcttccaaaaggaacccccttttcttgccaacaatgtatttgcttaaagtctttagggaattc |
208 |
Q |
| |
|
|||||| | || |||||||||||| |||||||| | ||||||||||||| |||| |||||||| ||||||| ||| ||||||||||| |||||||| || |
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|
| T |
17927078 |
gatgtgaagctctcctttaaggtttagttgtcctaattcttccaaaaggtaccctcttttcttaccaacaacatatatgcttaaagtccttagggaagtc |
17927177 |
T |
|
| Q |
209 |
agctttcctat |
219 |
Q |
| |
|
| | ||||||| |
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|
| T |
17927178 |
aacgttcctat |
17927188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 15320319 - 15320437
Alignment:
| Q |
59 |
atattggcttttttggcatctgctacacttttaactctctctaaattcttgatgtgcaactgtcctttaaggttaagttgtcccagttcttccaaaagga |
158 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||| |||||||| | | ||||||||| | || ||||||||| || |||||||| | ||| ||||||||| |
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|
| T |
15320319 |
atattggcttctttagcatctgttacacttttcactctctcaaggtgcttgatgtgaagctctcctttaagatttagttgtcctaattccgccaaaagga |
15320418 |
T |
|
| Q |
159 |
acccccttttcttgccaac |
177 |
Q |
| |
|
|||| ||||| |||||||| |
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|
| T |
15320419 |
accctcttttgttgccaac |
15320437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 16413393 - 16413571
Alignment:
| Q |
1 |
ttgggagacttcatttcttccccatgacaaccacaaatggttcagtttcttccttgaaatattggcttttttggcatctgctacacttttaactctctct |
100 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||| | ||||| | ||| || || ||||| |||| |||||||| ||||||||||||||||| |
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|
| T |
16413393 |
ttgggagtcttcatttctcccccatgacaatttcaagttgttcacgtgcttgctcgacatatttgcttctttggcattcatcacacttttaactctctcc |
16413492 |
T |
|
| Q |
101 |
aaattcttgatgtgcaactgtcctttaaggttaagttgtcccagttcttccaaaaggaacccccttttcttgccaacaa |
179 |
Q |
| |
|
|| | ||| |||| | | |||||||||||| | |||||| ||||| |||||||| ||||| |||||||||||||||| |
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|
| T |
16413493 |
aagtgcttaatgtaaagatctcctttaaggttcatttgtcctagttcctccaaaagaaaccctcttttcttgccaacaa |
16413571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 15335142 - 15335180
Alignment:
| Q |
121 |
tcctttaaggttaagttgtcccagttcttccaaaaggaa |
159 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
15335142 |
tcctttaaggtttagtggtcccagttcttccaaaaggaa |
15335180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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